Ogot006109.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459034.1:51706039-51730149[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.069 14 8.4 1.2 1 23 200 223 200 223 0.96 2 15 0.59 1.2e+02 5.5 0.2 1 23 314 337 314 337 0.87 3 15 0.0072 1.4 11.5 0.2 2 21 377 396 376 397 0.95 4 15 0.76 1.5e+02 5.1 0.7 1 23 402 424 402 424 0.94 5 15 2.1 4.2e+02 3.7 0.2 2 23 433 457 433 457 0.94 6 15 1.7 3.4e+02 4.0 1.0 1 14 702 714 702 721 0.74 7 15 0.25 49 6.7 2.6 1 23 733 756 733 756 0.86 8 15 0.035 7 9.4 0.1 2 23 762 783 761 783 0.97 9 15 0.34 69 6.2 7.7 2 23 869 890 868 890 0.95 10 15 0.16 32 7.3 0.5 2 23 906 927 905 927 0.96 11 15 6e-07 0.00012 24.4 2.7 1 23 933 955 933 955 0.99 12 15 0.00018 0.036 16.5 0.3 2 23 961 982 960 982 0.96 13 15 0.014 2.8 10.6 2.7 2 23 989 1011 988 1011 0.94 14 15 0.048 9.6 8.9 0.1 1 20 1019 1038 1019 1039 0.94 15 15 0.00097 0.19 14.3 0.5 3 23 1051 1072 1050 1072 0.93
Sequence Information
- Coding Sequence
- ATGGCGGATACATCCAGAAGAAGGTCTAGGAAGACGAAATTGGTGCCTCGATTATGTCTTATGGACGAAGATGATCTTGATTTGCAGATTCCAGcagtaaaattatcaaaaagtaTGAAGCAGAATCTAAATAAGGACAAAAATTTACCAGAGCCTGTTCCAAGCACTTCGGGGCAAGAAGTTGATACAAGTGTTCTGAAGAAAATCAATGCTTCGGTTAGACAAGACATTGAAGCAGAAGAAACATCACCCAGGAAATTCGAAGTTAATATTGAAATAGAAACATGCGATGGTGATGACGATGAATTTGCTGAAATCAAAGAACAGTTTCCATTGCTAAGACCTGAAAATACAGTCCAGACAATTAATCCTACACCCATACCGTTAAGTCTAGAACTTATACTCCATGCAGCCGACAAACTAAATGCATCAACAAATATAGCTGACAAAATCTTAAATTTATGTGTTAGAAATACTATAGGCTAcgagcaaagaaaaaaaattgccgttGGATATCATGAGAATCATATACAGAAAACACTAGAAGAATGGCGAGCATGGCAGGCCCGTAGCCTTCACAGAGAAGAACCATTGTTCTACAAATGCTACATCTGCACAAGATCATATTGGTATCTATCAGAGTTCCGTGAACACTTGTCTTCTGAACACAGTGGAGATAAGAATATTTCCACCTCATTAGAGAAGTATGAGATGCACGAAGCTAATATAATAGCTTATCATAAACAACTCATGGTCATCAAAGACATATACACTCCAGGACTTTGTTACCGCTGTGGTAAGGATTATGCTGCACATGAGATATCATTTAGGTTACAAGGGAAATACTACAAACTAGAAGGCTGTAcaagacattttttttgttgcaccagTTTGAAAAACCACCTAGTTTCGTGTAAAATGTGTAATGTTCAAGGAAAGttcaaatgtgatatttgtaaGTCAAGATATGATACAAAAGAAGCTGTGGACGATCATTTGGTTTTGTCACATTCAGTACGGTCCGATGTACCTATAATGGGTCGCTATACTTTCTGCAATAAATGTTCCGAAAGGTATGAGtgtaaatatttacatatttgttCGAATAAAGACTTAGGCCCTAACTCTGAATGTCCACACTGTCTTACGAGTTTTCAAAACGCTTTAGCATTGGAAAAACACATGAAACTGTCGAGGAAACCGTACAAATGTGAAGTTTGCGGAATTGGGATTGCGTTTAGCTGTCAGAAGTATGATCATATGTTGTCGCATACTGAAAAGTTTATGAAAGTCAGGAAATGCATGATCTGTGATGGTTTCAAGGTGTTTGTCAACGAAGGAGATGCTAAGACTCATTGGTCAATGAAACATAAGGTCTTGGATCTGCAACGGCAAATCTATTTTCCTAATGTTATCGTACCATCATCCTGTATATATCAGATGTTAGCAGAAACTGTACAGGAATCATTACAAGACGAAGAAAAATCACTAACAGAAGGCCAAGAATCGATATCAGAAGATGAAGACTTGATACGTGCAGAGATGGAACAAGAGGAAtttgaaattaaacaagaatTGGACCTAGATGAAAACGAATCGAAGATGCAAATTGACGAAGGAGATGTGTCAGCAGGTGTACAGAAGTCTTTACAAGAAACTCTTCTTGAATCCACAACAGAAATGATAATGGATGATGTTGTTGTCAAAGAAGAGCCAGTAGACATAGAAGACAGCCCAAGACTTGTGATCAAAGAAGAACCATTAGAAGAAGTTGATTACCAAATATTAGAACAAGAAGGAGTCAAAGAAGAACCGTTAGATCAAGTTGAGTACGAAGTAGTGGACCAAGAGGAACTAATGGAGAACTTTGACAGTCAACAAGTAAATATCAagcaagaaaaagaagaagagatAGATGATTATGAGGGAGACATTATCAAACTAAACTTCAACATAgaagattatttaattaaaaaagaatcaaCAGAAGGAGACGACAAAATGGTGGCAAACACAAATTCGGATAACGATGACAATTCAGCAGAAGAATCACAAAAATACGAACAAGAAATTTTAATAGGAGATAAgagattgagaaaaatgtacaGATGTAATAAATGTGGTTTCACAGCAAAACATAAGCTGTATAAAGCACATATTGATTTTGCATGCGCAAGCTCTTTGAAACATAGATCTTATACGTGTACAAAATGTACTAAGATATTTAATTCTATGAAGCGTTATTTACAGCATTTCGAACAAGATCATGGTTATGATAGAAAAAGTTGTCCGGATTGTTTACAAATATATGTAAATTATACGTCTTTAGGACAACACATTCAGTCACATATTAAACAGAATTTTGTTAGGGTTAAACTAATTACTTCTGCAGGCGGTGCATTGGAGACACCGAACTATCAGTGTAAAAAATGTGCAGAGCAGGTTGAAACTGTACGGTTCTTTGAACATTGGGAGACGCACATCAAGGCTCAACCGACTCACCCTGTTAAGGTGATCTCGAGGCCTAATAATGCTCCTAAACATGGGGAGCTGCATGAAACTATCTTAAAAGAGTGCAttgcCCGGCTATACCGCCAGCCCAAGCAATGCAACCACTGCCACAGATCTTTCAACCGAGTCAATGAATGCAAGCGACACATCATAGAACACTTGTTAGTGGACGCATACAACCAGAAACAAATATACCAGGTGTTAAAGTGCCAGATATGTGAAACCGGTTTTCTAGCATCAGACAAATACAAACAGCATATGAGAGATCATGCATCGTTACCCGTCTACAAATGTGAATTGTGCGACCGCACATTTAGTGATTCCAGCAATTTTACTAAGCACAAGAAAGTGCACAACTTGCAAGTGATTGTCTGTGATCTTTGCGGCAAGAAGTTCCAGTCGAAAGTGTCTCTGGGCAAGCATATTGagAAACATAGGAACACGGAGCCAATAACCTGTACTTACTGCAACAAGGTGTTCTACTTCGCGTCCACCCACCGTCGTCACGTCAGAGCCTTCCACGAAAAACCTACCGACAACCGTTTTCGTTGCGTCATATGCGGCGAACGTTTCGACAGCTTAAAACTGAAATGGAATCACATGTGGGAAGTGCATAAAGAACGTAAGCAGAAAGCCGATTGTCCAATATGCCATAAGTCTTATAGGAAGTATTCTGATGTTCGAGCCCATGCAAAGGCAGTCCACAATATGGAGATTTCAGTTTTGAGTGTCAAAAAAGGTAGTCCGGCATTGAAGTCCAGTGATGGGATTAAAAAGATATTGAATAGGTCGATGACGGCGATACGGGTGAATCAGGTAGAGACTTTGGTTGTCTATGATTCGGATTAA
- Protein Sequence
- MADTSRRRSRKTKLVPRLCLMDEDDLDLQIPAVKLSKSMKQNLNKDKNLPEPVPSTSGQEVDTSVLKKINASVRQDIEAEETSPRKFEVNIEIETCDGDDDEFAEIKEQFPLLRPENTVQTINPTPIPLSLELILHAADKLNASTNIADKILNLCVRNTIGYEQRKKIAVGYHENHIQKTLEEWRAWQARSLHREEPLFYKCYICTRSYWYLSEFREHLSSEHSGDKNISTSLEKYEMHEANIIAYHKQLMVIKDIYTPGLCYRCGKDYAAHEISFRLQGKYYKLEGCTRHFFCCTSLKNHLVSCKMCNVQGKFKCDICKSRYDTKEAVDDHLVLSHSVRSDVPIMGRYTFCNKCSERYECKYLHICSNKDLGPNSECPHCLTSFQNALALEKHMKLSRKPYKCEVCGIGIAFSCQKYDHMLSHTEKFMKVRKCMICDGFKVFVNEGDAKTHWSMKHKVLDLQRQIYFPNVIVPSSCIYQMLAETVQESLQDEEKSLTEGQESISEDEDLIRAEMEQEEFEIKQELDLDENESKMQIDEGDVSAGVQKSLQETLLESTTEMIMDDVVVKEEPVDIEDSPRLVIKEEPLEEVDYQILEQEGVKEEPLDQVEYEVVDQEELMENFDSQQVNIKQEKEEEIDDYEGDIIKLNFNIEDYLIKKESTEGDDKMVANTNSDNDDNSAEESQKYEQEILIGDKRLRKMYRCNKCGFTAKHKLYKAHIDFACASSLKHRSYTCTKCTKIFNSMKRYLQHFEQDHGYDRKSCPDCLQIYVNYTSLGQHIQSHIKQNFVRVKLITSAGGALETPNYQCKKCAEQVETVRFFEHWETHIKAQPTHPVKVISRPNNAPKHGELHETILKECIARLYRQPKQCNHCHRSFNRVNECKRHIIEHLLVDAYNQKQIYQVLKCQICETGFLASDKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLQVIVCDLCGKKFQSKVSLGKHIEKHRNTEPITCTYCNKVFYFASTHRRHVRAFHEKPTDNRFRCVICGERFDSLKLKWNHMWEVHKERKQKADCPICHKSYRKYSDVRAHAKAVHNMEISVLSVKKGSPALKSSDGIKKILNRSMTAIRVNQVETLVVYDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00112086;
- 90% Identity
- -
- 80% Identity
- -