Ogot006930.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459034.1:62932183-62949465[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.27 53 6.6 1.5 1 19 2207 2225 2207 2227 0.98 2 10 0.0019 0.38 13.3 1.6 2 23 2240 2261 2239 2261 0.96 3 10 0.0033 0.66 12.6 1.7 2 23 2266 2288 2265 2288 0.96 4 10 7.6 1.5e+03 2.0 0.5 2 11 2308 2317 2307 2321 0.83 5 10 7.3 1.5e+03 2.0 0.4 2 11 2357 2366 2356 2370 0.83 6 10 7.3 1.5e+03 2.0 0.4 2 11 2406 2415 2405 2419 0.83 7 10 0.00011 0.021 17.3 0.3 2 23 2455 2476 2454 2476 0.97 8 10 0.06 12 8.6 0.8 1 23 2482 2504 2482 2504 0.97 9 10 0.00011 0.022 17.2 2.0 1 23 2510 2532 2510 2532 0.94 10 10 3.3e-06 0.00066 22.0 2.3 1 23 2538 2561 2538 2561 0.98
Sequence Information
- Coding Sequence
- ATGTCTACCATTGCCGATTTATTTGCTGTTCAGAAGGAGATCATGGAAAATATGAATAAGCTTtacattaactttaaaaaagaagGTAAAGAGCGGAAAACATCGGAAAGTATTAAACGTCGTTTACAATCTTTAGAGACCTTATGGAGAGAATTCTCGCGTAACCATGACAATTTAGAGAATTTATGTGACGAAACTGAAGATAATGAGTACTTCGGTGACGATTCGTacactaaaactaaaacattttatgaCGACGTTAAGAGGCATTTATTAAGAGTTCTTGAGGGAACAACTACTCGGTCTCCATCACCAAAGAACCAACCACCAGCACCACCATCGCATGCAACGACCGTTCCACAGCCTAGCACATCAGATAACGGGTTTCCAAGTACCGGAACACTACCCAAAAAGGTTTTACCACTACCACGATTCGTTTTCCATGACGTCGACAAACCAAGTAAAATCGAGAAAATGATGAGAAAACAGCAAAGTAACTTCAAAGCATTAGCCCGAACTATTTCTCAGATCAATCTTAATGTTTTGTCTGAAAAATGGGAGTTTAAAGATGTTTTGAAGAATATTGAATCACGTTGGACAGCAATTGATTCCTTACATTGGGAAATCGACTGTAACTTACAAGGAGAAAACAGTAACTATGAAGATCTGTTCAACAGGTATGAGGATGAAtattgtgaaattaaaaaatctattaaccaAAGAATGTGGGACGCTCAGCACAGAGATAATTCCACACCAAAAATAGATATACCAATTTTCAACGGAAATTACCAACAATGGATTTCTTTCAAAGACTTGTTCAATGAATCTATCcacaataataattctatttctcCGGCCCAAAAAATGcagtttttaaaaatgaaactacGTGGAGAAGCTGAGAAACTGATACAACATCTTCGTATAAGCTCCGGCAATTACCAGACCTGTTGGGACATCCTAAATCaaagatacaataataaaaaactaatttttaatTCACACATGAATGTTCTCATGTCTTTGCCAGTAATGCACCAACAAACAGCTTCCAACATAAAAAAGCTTCATGATACCACTAATGAATGCCTCAACGCATTAAAAAATCTAGGCATAGACATATCTACCTGGGACCCGATAATCGTATACCTTATCACCCAGAAAATGGACGCCGAAACGTATACAGATTATATTGACTCATTGCCGGACCCTCGAGACCTGCCACATCTGCAAGATTTTCTAGCTTATCTTGAAGGAAAATTTATTGCCTTAGAGACAACTCATACCAATCAGCATAACCAATCAAAATGTGTGTCACACGTGTCAAAAGACAACAAGCCAATGACAGACATTCTATTAGCAACAGCTCAAGTTAATGTTTTAGGAGCTGACGGAACCTACAAAACTATGAGAGCCCTCATTGACCAAGGGTCTCAAACATCCATAATTTCCGAAAACGCAGCACAACAACTTGGAATCCCTCGCCGAAGGTGTAAAGGTTCCATCTTCGGGATTGGAGCGAAAGAAAGTAACTGTAAGGGAGTAATGACAATTACCATAGCATCAAAACATAATGAGTTTACCACGAATATTGatgtattaataatgaaaaacttaatcaaaaagcTACCAAACCAATCTTTCACCAAACCATCCTGGCAGTACCTCAAAAATATACAGCTCGCAGACCCTGAATTCAACCAAAGCCGCCCTGTCGACCTATTACTAGGTGCAGAGGTGTATTCTGAAATTATCCTACACGGCATTATAAAGGAAGATCAATCACAACCCATCGCACAACAGACGCAACTAGGATGGATCTTATGTGGTAACGTGAAATCGTACTACTGTAATGTGATCTTGAACAACTGTGACGATATAAAAAGGTTTTGGGAAATAGAAGATTTGACAGACCAACCCGATAACCAATCTAGAGAAGATTTATACTGCATACAACAGTATCAATCCGAAACTAAACGTCAACCAGATGGCCGTTATGTCGTAAGATTGCCAATGAAACCAGAAGTAAATGAACTATTGGGGGAGTCTAAGTCAAAGGCCATAGCTCAATTTCACCAATATCCAGAAGCAACGAAGGTTCTGGAAAATAACCTGTACATGGATGATGTTTTACATGGGCAACACAACCTCGACTCTGCCAAAAAGATTAAGGATCAATTAATCGAATTATTTAAGGCCGGTGGGTTTAATCTGCGTAAATGGAAATCAAATGAAACAGCCTTATTAGAAACCACTCCAAACGATAATGAAAACTCATTTCAGTTCAAACAGCAGGAATCAACTAAGACTCTAGGATTGAAATGGACACCATCCACTGACcaatttagttttgaaataaaaatgttaccatTTGTGCATGATGAACGCATAACCAAAAGAGAGCTTCTCTCAGAGATATCGAAAGTATTCGACCCTCTAGGATGGCTCTCCCCTGTAACCACAAAATTAAAACTCCTATTTCAGTCAATTTGGCAACTAAACCTCAACTGGAGTGATATTTTACCAGAAAATATACACAATGAATGGAACCAAAATAAACTAGACCTACAACAACTAAATGACATACGAATACCAAGATGGTTGCAATGCCATGAAAACGATAACATCGAGCTGCATGGATTTTGCGACGCTTCAACCAAGGCCTACGCCTGTGTCATCTACTGTAAGGCGCATAATTCAGTGGTGCTCGTAGCTGCAAAGTCCCGTCTCGTACCGTTGACAAAAGCTGTGACGTTACCGAGATTAGAATTATGTGCTGCGCAATTAATGACCAAGTTAATGAACAAGATGCAATTGTGTCTCACAGAACACCATATTAAAACATTCGGATGGTCAGACTCCACAGCGGTACTAGGGTGGATTAACGGTAACCCAAACCGTTGGAAACCATTCGTAGCCAATAGAGTTGACCAAATCGTCAAATGTATACCACCTGAACGTTGGAGTTACGTTAAATCAGACGAAAATCCTGCCGATTGCGCAAGCCGAGGGATAACCGCTGCGCAACTGTTAAAACATCCCATTTGGTGGAGTGGTCCTAACTGGCTTCTAACGTCGAAACCAAATCCTAGTACCAAGAAACCAAAATACTACACGCACGAAGAAACTAGAAAACAATACCAAACCAATGTCATCACTAAACCATATGAAAATGACGTCATAGGTAACTTGATAACCAACAACAGTACTTATTTACGAACGTGTCGAGTACTCGCGTGGATATTACGCGTGTTCtcacataacaataacaaaccaaCATACCTAACCATTGGAGAATTGAATAGAGCTGCTAACCAATTAGTAATGCACGTACAAAGAACAGaattttatgaagaaattaCCAATCTTAAAACCCAGACTAATTTGAGTTCAAAAGGTCGTTTATTACCATTACACCCTTACATTGACTCGGAAGATGTTTTACGAGTTGGCGGGAGAATAAAACATGCCAATCTCAGTGAAGACATGAAGCATCCGATGATATTACCACACAATAATCAGCTTACTGATATGCTTATTGACCATGCACATAAAATGACATTCCATGGAGGACCTCGACTTACGTTAGCTTGGTTGAGGAGGAAATTTTGGATCATAGGTGGCAATAATGCCGTAAAGAAGCGTTTACGTAACTGTGTGATATGCCGACGAGCTAAATttgaaaaccaaaaccagttCATGGCAGACTTACCAGCTGCGCGGATAAATCAGACACGACCCTTTTTTCATACGGGCGTTGATTTTACCGGCTATGTAGAAGTAAAAAGTAACAAGGGCCGCGGCATAAAATGCAGTAAAGGATATAtagctgtttttgtatgtttagcaACAAAAGCAGTTCATCTTGAGCTTGTGTCGGACCTCACGTCATCAACATTTATAGCGGCACTTCGAAGAATGTCAGCTCGACGAGGAGCTCCTCGACACATATATAGCGACAACGGAACCAATTTTGTTGGAGCTAACAACACCATACAAAAGGAGTATTTTAATTTGACTCAAACCATGGACCAAATTGCTCATCAACATCTGGCAGAAATGCAAATAgagtggcattttaatgcacCATCATGGCCAAGCGCAGGAGGTCTGTGGGAGGCCGCCGTCAAAAGCCTTAAATACCATCTACGTCGAGTGCTAGGTAACCAAAAGCTAACCTACGAAGAATTTTCGACCCTATTGTCACAGTTAGAAGGCTGCTTGAATACACGACCTCTGTGTGCTATTTCTGAAGATCCAGacgatttaaattttttgacaccTTCGCATTTTCTGGCCAGTGGACCATTATTAACCATAATAGAGACCGAGAAAGACGAACGTACCAGATGGCAACTCGTCCAGAAAATTAACCAAGATATTTGGAAACGTTGGCAATCTGAGTATTTAACCCAACTAAATACGCGATCCAAGTGGCACCATTctcataaaaatgttaaaatcaatGACATAGTGATTATTCAAGACGTACACGTGTCTCCAGGGAGGTGGGCCCTCGGAAGAATTTTAGAAATTCATCCTGGCGATGACGGTCTTGTTAGAGTAGTCACGCTCAAAACCAAAGGAGGCATATTAAAAAGACCAATCACCAAACTGTCAATCCTTCCAATCCACCAAGAGGAAAACCAACCAAATGTACCGACCGAAATAAATCAGCAAAGAACCACAACTGAAGTGGACCCCGAAAAATGCTATGAGACACCACCACGTCGAAGAACGAGCATTTCAACGAAATGTAGCATTTTAACCATGGCACTTATGGTGCTTATGCTGTTAGTGTCGCCATCACATTGTACTCTCCACACAAAAAAGCTGCCAGATAACCAAACCATCTACTTCGATAAAATCAGTAACATGAGACTGATTAGAGACGAATGGAAACTAGTAGTATTTTATGATATGACTGCTTATTGGGAAGGCGTATCGTTAGCCACAAAGTATATAGACCATTTAGATaattgttgtcaaaaaatacaaaccatATCTCACTGTCAACTAGTTCTGTTACATCTGCGCCATTGTCAAGATGAATTAGaccattataatgaaattttgaCCAACCATGGACAGTTACCAGAACGGCACCATCTTCGTCGTCGTGGCTTAGTCAATGCTGTGGGGTCTATAGCTCACAGTTTATTTGGAGTACTCGACGATGACTTCGCACAACAATACCAGCAAGATTTGACTAAGCTTCGAGGCAACcagaaatattttaaccaattgCTGCAAAATCAAACATCGATAATTGAGTCAGAGTTTAATGTTATAAAGAGAATGGAAAAAACCGTAAGACAACAACATAAGAATTTTAACCAGCAtcttaataaaatagataacttAACTAATAGTATGCAAAAACAAATATCTGAAAACGCATATATCAATGAATTTACCATGTCTTCAATATCAGCCAACGGTATACTTATGAATCTGAAGGATATACAACAAATGTTATTAAACACAATCACTGACATCTTCCATGGTACATTCAACATACATCTACTACAACCAGAACAATTAACCAAGGAACTTCATATCATCTCAGCCCACATCTCTAAGGAATTATCGCTACCAATCGATAACATTCAGACTGACTTAACCAAACTTTACCATTTATTAACGGTTAAAACAAGATTTACAGGGGACAATTTGatattcgaaataaaattacCGTTAGTAGGCAGAGACACCTTTGAAATATACAAATTGACACCAATTCCAATAGCAATCGGCGACAAAATGCGACAAATAATTATTGCATCTGATCTATTGGCCATCAACTATCAAAAGGACTTACAAATACCACAATCTAGTCTACAACTACAACAATGCGTTCATTATGATTTAGACATCTTGCTCTGTGCCCATCAAATACCTATTTCAATAACCAAAACAGAACCAATTTATTGTGCTAGAGAAATTGAGTCCTTAAGTTGTAAGACGGAAAGTAGAAAGTGCAAGAATACCTGGGTACAATTAAACAAGGTAAACAATTACTTGTATTCATGTTGCGGGCAATGCTCCATACAAGTCATATGTGACGATCAAATTACCATTGAGCGATTAGACAAGGTCGGGATACTCGCATTAGCAAGTGGATGCGTCATCAAAGACGACGGGATCACATTACTTTCGCGCAGACAGTCGAACAATGACTTAAGGTTGAAACCAGATATCATAAACATTGATATACCTACCATtaacaatattgtaaatgtgaccATGCCCTTACATGTTTATGAGATAGACACTAACCAAACAGACATCCGCTGGGAATTAAAAATGATCAGCGATAAAATTaatcaagtaaaaaataacaccaAAACAGATTTAGAAGACGAAACATCTTTAAACTACCACGATGTTCACCACTACATCGCAATTTACATAATAGCTGGAGCTATTCTATTAACATGTTTGGCGTACGGAGTGCGGAGGATCCGCGCACGAACGCAGTGGCGCGCGGAAGCGACGCCAACGTCCCGGACGCTGCCACCGCCCCAACCGCAACCGAGAACCCGCCGCGTTGCTGATCACCAGTGCCAGAGTGAAACTAATCAGTGTTTTATTAAAGTCAACTTAAAACCTCAATTCAAATGTGCAGTGTGCGAACAGTACTTTAAAACTATGGAAGCTTTAAAAAATCATTGTAATAGCTATGACAACGAAATTTGTGACGGCAGTCTGTGCTCCTGTTTCCAATGCGGTGAGAACCTTTCCACACAAGATGCTCTCAGAGATCACCTCAAGACTCACGACGTTGGCGTCAAATGCGAAGAGTGCAACAGGACGTTTGCTCACGAGCGCTCGTTCTCCATCCACTACCAGCGAGTACACCTGGGCATCAAGCTGAAGCATCACCCGCCCAGGGACAAGAGGAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGGACAAGAGGAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGTCCATATTACATCAAGCTGAAGCATCACCCGCCCAGGGACAAGAGGAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGGACAAGCGGAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGTCCATATTACATCAAGCTGAAGCATCTCCCGCCCAGGGACAAGCGGAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGGACAAGCGGAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATAGTCCATATTACATCAAGCTGAAGCATCACCCGCCCAGGGACAAGCGGAACAAGGTGCCCTGGGTGTGCGAGATCTGCGGCAAGAAGTGCATATCGAACGCTGCCTTGGTGTATCATCAGCGTACCCACACGGGAGAGAAGCCGTTCCAATGTATTGAATGTCCGAAGAAGTTCAGCATCTTTCAAAGATTACAGATCCACGTCCGCACGCACACGGGGGAGAGACCGTTCAAGTGCTCCACTTGTCCGAAGGCGTTCAAACACAAGGCAGCGCTTAACAGGCACGACCGGGTGCACTCCGGGGCGAAGCCCTACCAATGCGGTCACTGCGGCAAGACGTTCTCTCAGTCGAACTCCATGAAACTGCACGTGAGGACCGTCCATCTGAAGCTGCCCGCACCATACAGGAGTCGACGAGGGAACCAACTGGACATGCTGGACGGTGACGTCAGCTGA
- Protein Sequence
- MSTIADLFAVQKEIMENMNKLYINFKKEGKERKTSESIKRRLQSLETLWREFSRNHDNLENLCDETEDNEYFGDDSYTKTKTFYDDVKRHLLRVLEGTTTRSPSPKNQPPAPPSHATTVPQPSTSDNGFPSTGTLPKKVLPLPRFVFHDVDKPSKIEKMMRKQQSNFKALARTISQINLNVLSEKWEFKDVLKNIESRWTAIDSLHWEIDCNLQGENSNYEDLFNRYEDEYCEIKKSINQRMWDAQHRDNSTPKIDIPIFNGNYQQWISFKDLFNESIHNNNSISPAQKMQFLKMKLRGEAEKLIQHLRISSGNYQTCWDILNQRYNNKKLIFNSHMNVLMSLPVMHQQTASNIKKLHDTTNECLNALKNLGIDISTWDPIIVYLITQKMDAETYTDYIDSLPDPRDLPHLQDFLAYLEGKFIALETTHTNQHNQSKCVSHVSKDNKPMTDILLATAQVNVLGADGTYKTMRALIDQGSQTSIISENAAQQLGIPRRRCKGSIFGIGAKESNCKGVMTITIASKHNEFTTNIDVLIMKNLIKKLPNQSFTKPSWQYLKNIQLADPEFNQSRPVDLLLGAEVYSEIILHGIIKEDQSQPIAQQTQLGWILCGNVKSYYCNVILNNCDDIKRFWEIEDLTDQPDNQSREDLYCIQQYQSETKRQPDGRYVVRLPMKPEVNELLGESKSKAIAQFHQYPEATKVLENNLYMDDVLHGQHNLDSAKKIKDQLIELFKAGGFNLRKWKSNETALLETTPNDNENSFQFKQQESTKTLGLKWTPSTDQFSFEIKMLPFVHDERITKRELLSEISKVFDPLGWLSPVTTKLKLLFQSIWQLNLNWSDILPENIHNEWNQNKLDLQQLNDIRIPRWLQCHENDNIELHGFCDASTKAYACVIYCKAHNSVVLVAAKSRLVPLTKAVTLPRLELCAAQLMTKLMNKMQLCLTEHHIKTFGWSDSTAVLGWINGNPNRWKPFVANRVDQIVKCIPPERWSYVKSDENPADCASRGITAAQLLKHPIWWSGPNWLLTSKPNPSTKKPKYYTHEETRKQYQTNVITKPYENDVIGNLITNNSTYLRTCRVLAWILRVFSHNNNKPTYLTIGELNRAANQLVMHVQRTEFYEEITNLKTQTNLSSKGRLLPLHPYIDSEDVLRVGGRIKHANLSEDMKHPMILPHNNQLTDMLIDHAHKMTFHGGPRLTLAWLRRKFWIIGGNNAVKKRLRNCVICRRAKFENQNQFMADLPAARINQTRPFFHTGVDFTGYVEVKSNKGRGIKCSKGYIAVFVCLATKAVHLELVSDLTSSTFIAALRRMSARRGAPRHIYSDNGTNFVGANNTIQKEYFNLTQTMDQIAHQHLAEMQIEWHFNAPSWPSAGGLWEAAVKSLKYHLRRVLGNQKLTYEEFSTLLSQLEGCLNTRPLCAISEDPDDLNFLTPSHFLASGPLLTIIETEKDERTRWQLVQKINQDIWKRWQSEYLTQLNTRSKWHHSHKNVKINDIVIIQDVHVSPGRWALGRILEIHPGDDGLVRVVTLKTKGGILKRPITKLSILPIHQEENQPNVPTEINQQRTTTEVDPEKCYETPPRRRTSISTKCSILTMALMVLMLLVSPSHCTLHTKKLPDNQTIYFDKISNMRLIRDEWKLVVFYDMTAYWEGVSLATKYIDHLDNCCQKIQTISHCQLVLLHLRHCQDELDHYNEILTNHGQLPERHHLRRRGLVNAVGSIAHSLFGVLDDDFAQQYQQDLTKLRGNQKYFNQLLQNQTSIIESEFNVIKRMEKTVRQQHKNFNQHLNKIDNLTNSMQKQISENAYINEFTMSSISANGILMNLKDIQQMLLNTITDIFHGTFNIHLLQPEQLTKELHIISAHISKELSLPIDNIQTDLTKLYHLLTVKTRFTGDNLIFEIKLPLVGRDTFEIYKLTPIPIAIGDKMRQIIIASDLLAINYQKDLQIPQSSLQLQQCVHYDLDILLCAHQIPISITKTEPIYCAREIESLSCKTESRKCKNTWVQLNKVNNYLYSCCGQCSIQVICDDQITIERLDKVGILALASGCVIKDDGITLLSRRQSNNDLRLKPDIINIDIPTINNIVNVTMPLHVYEIDTNQTDIRWELKMISDKINQVKNNTKTDLEDETSLNYHDVHHYIAIYIIAGAILLTCLAYGVRRIRARTQWRAEATPTSRTLPPPQPQPRTRRVADHQCQSETNQCFIKVNLKPQFKCAVCEQYFKTMEALKNHCNSYDNEICDGSLCSCFQCGENLSTQDALRDHLKTHDVGVKCEECNRTFAHERSFSIHYQRVHLGIKLKHHPPRDKRNKVPWVCEICGKKCIGQEEQGALGVRDLRQEVHSPYYIKLKHHPPRDKRNKVPWVCEICGKKCIGQAEQGALGVRDLRQEVHSPYYIKLKHLPPRDKRNKVPWVCEICGKKCIGQAEQGALGVRDLRQEVHSPYYIKLKHHPPRDKRNKVPWVCEICGKKCISNAALVYHQRTHTGEKPFQCIECPKKFSIFQRLQIHVRTHTGERPFKCSTCPKAFKHKAALNRHDRVHSGAKPYQCGHCGKTFSQSNSMKLHVRTVHLKLPAPYRSRRGNQLDMLDGDVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -