Basic Information

Insect: Orthosia gothica
Gene Symbol: salm
Assembly: GCA_949775005.1
Location: OX459058.1:19499541-19522351[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.36 71 6.2 1.9 1 21 59 79 59 80 0.94

2 8 5e-06 0.001 21.4 0.9 1 23 379 401 379 401 0.98

3 8 1e-05 0.002 20.5 2.1 1 23 407 429 407 429 0.98

4 8 0.061 12 8.6 4.2 2 23 685 706 684 706 0.97

5 8 0.03 6 9.6 1.6 1 14 712 725 712 726 0.94

6 8 0.79 1.6e+02 5.1 0.0 10 23 753 766 751 766 0.93

7 8 4.5e-06 0.0009 21.6 1.7 3 23 847 867 845 867 0.96

8 8 5.4e-07 0.00011 24.5 0.5 1 23 873 895 873 895 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.36	71	6.2	1.9	1	21	59	79	59	80	0.94
2	8	5e-06	0.001	21.4	0.9	1	23	379	401	379	401	0.98
3	8	1e-05	0.002	20.5	2.1	1	23	407	429	407	429	0.98
4	8	0.061	12	8.6	4.2	2	23	685	706	684	706	0.97
5	8	0.03	6	9.6	1.6	1	14	712	725	712	726	0.94
6	8	0.79	1.6e+02	5.1	0.0	10	23	753	766	751	766	0.93
7	8	4.5e-06	0.0009	21.6	1.7	3	23	847	867	845	867	0.96
8	8	5.4e-07	0.00011	24.5	0.5	1	23	873	895	873	895	0.98

Sequence Information

Coding Sequence: ATGCCGCGCGTCAAGCCCTCCTGCGTCCGCCGCGTCTCCATCGCGACGATAAAATTTGGCATACATGAGAAAGTGAGCACTAAAATTCGTCACCAGCGGGGTGAAAGTTCGGGATCGTGTTCCGAAGAAGAGATCAACCATGTGTCTGACGAGACGAGAGATCGCCCTGAGGCGCACATGTGCCCGCGCTGTCAGGAACAGTTCGAGAACCTGCACGAATTCCTGTACCACAAGCGACTGTGCGATGAGAAAGCGTTGCAAATGGGTGAGGAGAGAATGCACTCCGATCCTGAGGAAATGGTCGTCTCAGGCGACGAAGAAATGGATGGACCTAACAAACGATTAGAACAAGTCCGACGGCATCGACAAGATGCAGAGAATAATAACAGCCTCGAAGATGGCGAGGCTGAAGTGCCTGAAGCCGACGTGCCACCGGTCGGCCTGCCCTTCCCGGTGGCCGGCCACGTCACGCTCGAAGCTTTACAAAATACTAAAGTTGCCGTAGCACAATTCGCTGCGACTACAATGGCGAACAACGCAGATAATGAAGCGGCGTTACATGAACTAGCCGTGCTACAAAGCACGTTGTTTACGCTACAACACCAGCAAGTGTTTCAGCTACAATTAATACGCCAATTACAAAACCAACTATCATTAACGCGACGGAAAGATGACCAGCTCCCGAGCCCGCCGCCGAGTGAACCCGAGCCGGTGCCGGTACCTGCCGCTCGCTCGCCGTCGCCGCCTCGTCCGCCACGGGAGCCTACTCCTGTCGCACCCCCTCCTCCCACTAGTCAAAGCTTACCGTCAACCCATTCGCATCTCACACCTAAGACGGAACCAATCTCCGTTCCTAAAATCCCAATCTCATCTCCACCGGTGATGTCCCATCCACCGTACAGCTCCATTTCCTCATCGTTAGCGTCTACAATAATCACAAACAACGACCCGCCGCCGTCTCTCAACGAACCTAATACGCTAGAAATGCTACAAAAGAGAGCACAAGAGGTACTAGACAATGCGTCACAAGGCCTACTAGCCAATAATCTTGCCGATGAACTCGCTTTCCGTAAATCAGGAAAAATGTCACCCTATGATGGGAAATCCGGAGGAAGAAATGAACCATTTTTCAAGCATCGCTGCCGTTACTGCGGAAAAGTGTTTGGAAGTGATTCTGCGCTGCAAATCCACATTCGATCACACACAGGTGAAAGGCCTTTTAAATGTAATGTATGTGGATCACGATTTACAACCAAAGGGAATCTCAAAGTACATTTCCAAAGACATACATCAAAGTTTCCGCATGTCAAGATGAATCCCAATCCAGTACCAGAGCATTTGGATAAATACCACCCCCCGCTACTAGCGCAGTTGTCGCCGGGACCAATCCCTGGCATGCCACCACATCCACTTCAATTCCCTCCGGGTGTGCCAGCTCCTTTTCCGCCAAGCTTGCCGCTGTACAGACCCCCACACCATGACTTGCTACCGCCACGTCCACTCGGAGACAAACCTCTACCGCCTCATCCACTGTTCGCCATGCGAGAGGAACAAGACGCTCCGGCTGATCTCAGTAAACCATCCGCGCCGAGCCCTTCTCGATCAGCACCCGAGGTTAAGTCTGAACCACAAGACGATGATTGTCATCGAGATTCCAGTTTTGAAGACGTTGACCGCGTATCTCCTAAACGAGAACCTGATGAAAATGATGCCACGCAAGATCAAGAACAAGACAGATATCCATCAACATCGCCCTACGACGACTGCAGCATGGACTCTAAATATAGCAATGAAGAACAAATCGGCAGAGAGAGTCCTCATTTGAAGCCCGATCCAGACCAACCGGAAAATCTCTCAAGTTCGGAGAGCGGGCGGAGCGCACGGGCCTCGCCTCCGTCGCCCAGCATGTCGACGCTGTCGACGCCGCCGCGCCTGCCGCTGCACTCGCCGCTGCCGTCGCCGCCCACGCCTATCGCCGCGCTGGGCGCGCTCGGAGGATCGCCCTTCAGCCCGCTCGGACTCGCGTTCCCTCCCGCAGTGCGCGGCAACACGACCTGTAACCTCTGCTACAAGACGTTCGCCTGCCACTCCGCTCTGGAGATACATTACCGGAGCCACACCAAGGAGCGACCGTTTAAGTGCACCGTCTGCGACCGCGGATTCTCCACAAAGAGCAGTGGCGGCGGTTGCCGGTGCGGTAGGCGCGCGCGCGCACCCCGCCCCCCGCACGCCACTGCTTTGGATCTGTGGAACGCCTTCGTTTACCCGGGCAACATGAAGCAGCACATGCTAACGCACAAGATCCGTGATGTCCCGCCCGGGTTCGACAAGAGCTCGAGTGGAGCCGATGATTGCCGAGACACGAGCCCCGACCGCCGCTCCTCGCCCGACAAACTCGACCTCAAACGATCGCCGCCTGCGCACCCCCCGCCGCAAATGTCGCACCCCCCACCTATTGATATGCCGCCAATGCCTAAACGGCCTAGTGTACCCAGCGTGCCAACACACCCCCAACCGCTGACGTCCTCCAAGCACCTATGCGGAGTGTGCCGCAAGAACTTCTCCTCGTCGTCTGCGCTACAGATCCACATGCGCACGCACACCGGGGACAAGCCCTTCCGATGCGCCGTCTGCCAGAAGGCCTTCACCACAAAGGGTAACCTCAAGGTGCACATGGGCACGCACATGTGGAGCGGCGGCGCGTCGCGGCGCGGGCGGCGCATGTCGCTGGAGCTGCCGCCCCGGCCGCTGCACGAGCCGCACGACTTGCTGCGCCGCCCCGACCTCTTCTACCCCTACCTGCCCGCGCCCTTCCTCAACGGCATGCAGCAAAAGTTGAATGAAATATCAGTAATACAGCAAAGCGCGGGCCAAAACGGCGTAGCCGGAAAATTCCCAGGACTTCTTGGTTTCGGGGCATTCGGGGGCGCGCGACCAGGCGCCGCGTCACCACTGGAGCGACCGCCGTCACTAGAAGGCGGCGACGAGAGGCAGGCCGCCATGCGCGAGCTGGCCGAGCGCGGCCGCGAGCTGGCGGAGCGCAGCCGGCAGATGCGCGAGGACAGCGAGTACCGCCAGGCGCCGCTCGCGCCGCACGCGCCGGGCCCGGCGCAGGCCAGCCCGCCCGCGCCGCACCACCCGCACCCGCTGGCGCCGCTGCAGCCGCCCGCGCGCACCGAGGGGCTCACCGTGTAG
Protein Sequence: MPRVKPSCVRRVSIATIKFGIHEKVSTKIRHQRGESSGSCSEEEINHVSDETRDRPEAHMCPRCQEQFENLHEFLYHKRLCDEKALQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATTMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDDQLPSPPPSEPEPVPVPAARSPSPPRPPREPTPVAPPPPTSQSLPSTHSHLTPKTEPISVPKIPISSPPVMSHPPYSSISSSLASTIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTSKFPHVKMNPNPVPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGVPAPFPPSLPLYRPPHHDLLPPRPLGDKPLPPHPLFAMREEQDAPADLSKPSAPSPSRSAPEVKSEPQDDDCHRDSSFEDVDRVSPKREPDENDATQDQEQDRYPSTSPYDDCSMDSKYSNEEQIGRESPHLKPDPDQPENLSSSESGRSARASPPSPSMSTLSTPPRLPLHSPLPSPPTPIAALGALGGSPFSPLGLAFPPAVRGNTTCNLCYKTFACHSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCRCGRRARAPRPPHATALDLWNAFVYPGNMKQHMLTHKIRDVPPGFDKSSSGADDCRDTSPDRRSSPDKLDLKRSPPAHPPPQMSHPPPIDMPPMPKRPSVPSVPTHPQPLTSSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHDLLRRPDLFYPYLPAPFLNGMQQKLNEISVIQQSAGQNGVAGKFPGLLGFGAFGGARPGAASPLERPPSLEGGDERQAAMRELAERGRELAERSRQMREDSEYRQAPLAPHAPGPAQASPPAPHHPHPLAPLQPPARTEGLTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00622287;
90% Identity: iTF_00001461;
80% Identity: -