Ogot006228.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459034.1:54117723-54161991[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0014 0.28 13.7 0.1 3 23 251 271 249 271 0.96 2 16 0.041 8.1 9.1 0.9 1 23 275 298 275 298 0.96 3 16 0.023 4.6 9.9 2.0 1 23 303 326 303 326 0.96 4 16 0.0045 0.9 12.1 0.2 2 20 331 349 330 350 0.94 5 16 7.9e-05 0.016 17.7 0.9 1 20 351 370 351 372 0.95 6 16 0.0055 1.1 11.9 0.3 1 23 378 401 378 401 0.95 7 16 0.52 1e+02 5.7 0.4 3 11 413 421 412 424 0.90 8 16 6.2e-05 0.012 18.0 0.9 1 23 467 489 467 489 0.98 9 16 1.1 2.2e+02 4.6 1.6 2 23 494 515 493 515 0.95 10 16 1.6 3.3e+02 4.1 2.3 1 22 518 537 518 537 0.90 11 16 0.0013 0.26 13.8 3.6 1 23 534 557 534 557 0.93 12 16 0.013 2.5 10.7 0.2 3 22 567 586 566 590 0.92 13 16 0.0046 0.92 12.1 1.4 2 23 601 623 600 623 0.96 14 16 0.52 1e+02 5.7 6.0 1 23 629 652 629 652 0.95 15 16 9e-07 0.00018 23.8 0.4 3 23 663 683 662 683 0.99 16 16 0.0091 1.8 11.2 2.0 1 23 689 712 689 712 0.95
Sequence Information
- Coding Sequence
- ATGCTTGATGCATCAAAATATCACACACAGACTACTGTTAAAATAGAAGTAAATTCATCTGATGAGGAAGGTACTCTGAGTTGTATTAGCGAAATCTTGGACGAAGGCAGCTGTAGCAATGACTATGATGAAATCATCCTGCCTCCTAAAATACAGCAAGTGTCCTGTGATCCACTGTTGGTACCAAGACACAACCAGCCAATGCCTTGGACAGAGATCGAAGTACCACCGCTGTTTACAACCCCTATAAAAGACGAAGTTACAACCCCTGCATCCGTACCTCACTACGCGCTTCCAAATGAACAGATCCTAAGAGGCTTCAGAGAACCCGTTAAAGTTACCGTTAAAAACTCGAGCTTAACGGCAAAAGATACCAACCCCGGTACAGTGACAAAAGATGAAGATCCAGCCAAGAGTCTGAAAAAGAACGACCTTCTTAGAGAATTGCTGACAAAGCCATCAATGAGCGGAGAGCAATTTTTATTGAGAGGGCTTCCTCTTACACCAAATGTACCAGAATGTATCAACATTGGTACTGGTGTCAACTATTGTGAGTGCTGTCAAAAAGATGAAGCGAAATTGATCATCTTGAATGAAAAGGAGTTGAAAGAGTTTCGagagaagaggaagaagaatacAACATATGGGACGAGTCCGTTTAAGTGTGAGACATGTATTGAGTGGTTTAGGAGGCGAGAAAAATTCGACGAGCATAATTTGAAACATGATGAGTCGCGAGGCAAATCAATTTGCGGAATCTGTGAACAGAGATTTGCCGACAATAATGATCTCAGTGTTCACTACAAGCAGCATTTTATGGTGTACGAATGCATGAAGTGTCCGTATCGGAGTGACGACAGATATAAGTTGTCTGCGCACAGTCGCTTGAGGCACGAGCAATCCTCCTTCACCTGCAAGAAATGTTTTGAAGTCTTCAAGACAGTTAGAGACCGACGCATTCATACGCTCAAAGTACATGATCAGAAGCTGCCTTGCAAGGAGTGCACTAAAACGTTCCCTAACGCCCCTCGGTTGAAACTGCATATACACTTCAAATGTGATCATTGTGATAAATATTTTGGTAGTAAAGAATCTTTGAAGAATCATGTCGCAGAACTTGGCGGCGAAAAATATACTTGCGATATTTGTAAGAAGgaTAGCAAATCTAAGAAGGTTCTGGCCAGTCATATTGCACAAGTTCACTACAAAATTATGCCGAAGTCCAAGCCTAAGATATGTGAATTCTGTGGGAAATCATTTACAATACAACCACAACCATTATTACTATGTTGGGAATGTATAGCTTTACTTAAGAAGATAAAACTCTTCAAGGATAAATATGAAGAAGCACAGAGGATACTGACATATCATTATCTTAATAAAAAGTCCGCAGGTTCCCACGTATGCCCAACTTGCAGTATACGTTTTACCAGCGAATCCTTACTAAGCGCACATACTCAGACGCACGACTTCGCCTGGGAGTGTTCGCGCTGTGTCTTCCAATGTTACTCGCTGAAGAGATTGAATGCACATATCAAAATACACAGAGCCTTCCAGTGTGTGTACTGTGAGGCCAAGTTTGAGCGTCACTTGGAGAAGCACATCTGTACCACTTGCTCCAAGCACTACAAGACGCGAGAAACCCTCAAGGCACATATCTCGGAGCGGCACAGTGGTTGTGCGCCTGAACAGGCGTATTGCGTGCTATGTGATAAGCAGTATGTAAGCAACACTGCATATAGGAGGCATGTTAATACAAGCGCAGCGCATATGAAGGAGAGTCAATGCAAAAATAGGGTTCAGTGTCCAGAATGCAGTAACACATACTCAAGGCGAGTGTATATGATGAACCACTATAGACATGTGCATAAGAATCAGTCAAAACACAACTGCTTGGAATgtgataaaCACTTTTTAAATAGGACGAAGTACTTAGACCATATGCGGTACAAACACGAAGGAGTTAAGAAAGAGAAGAACAAACTGTGCAATATTTGTGGCAGGGGGTTCGCtgataAAACCACTCTACAGAACCACATACGAACGCACACGGGCGAGCGTCCGTACAAATGCGAGCATTGTGCCGCTAAGTTCACTCAACGATACGCCATGCTGACACATGTCAAGTTTATCCATATGAAGAGTAAGAGAAAACCGCAGTGA
- Protein Sequence
- MLDASKYHTQTTVKIEVNSSDEEGTLSCISEILDEGSCSNDYDEIILPPKIQQVSCDPLLVPRHNQPMPWTEIEVPPLFTTPIKDEVTTPASVPHYALPNEQILRGFREPVKVTVKNSSLTAKDTNPGTVTKDEDPAKSLKKNDLLRELLTKPSMSGEQFLLRGLPLTPNVPECINIGTGVNYCECCQKDEAKLIILNEKELKEFREKRKKNTTYGTSPFKCETCIEWFRRREKFDEHNLKHDESRGKSICGICEQRFADNNDLSVHYKQHFMVYECMKCPYRSDDRYKLSAHSRLRHEQSSFTCKKCFEVFKTVRDRRIHTLKVHDQKLPCKECTKTFPNAPRLKLHIHFKCDHCDKYFGSKESLKNHVAELGGEKYTCDICKKDSKSKKVLASHIAQVHYKIMPKSKPKICEFCGKSFTIQPQPLLLCWECIALLKKIKLFKDKYEEAQRILTYHYLNKKSAGSHVCPTCSIRFTSESLLSAHTQTHDFAWECSRCVFQCYSLKRLNAHIKIHRAFQCVYCEAKFERHLEKHICTTCSKHYKTRETLKAHISERHSGCAPEQAYCVLCDKQYVSNTAYRRHVNTSAAHMKESQCKNRVQCPECSNTYSRRVYMMNHYRHVHKNQSKHNCLECDKHFLNRTKYLDHMRYKHEGVKKEKNKLCNICGRGFADKTTLQNHIRTHTGERPYKCEHCAAKFTQRYAMLTHVKFIHMKSKRKPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -