Ogot006441.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459034.1:56511347-56522362[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.082 16 8.2 0.6 3 23 40 60 38 60 0.93 2 16 0.89 1.8e+02 4.9 2.8 1 19 69 87 69 92 0.92 3 16 0.015 2.9 10.5 5.0 1 23 97 120 97 120 0.95 4 16 0.0003 0.06 15.8 0.8 1 23 122 144 122 144 0.97 5 16 5.3 1e+03 2.5 0.2 1 7 151 157 151 162 0.89 6 16 0.33 66 6.3 0.2 1 23 178 201 178 201 0.95 7 16 0.15 30 7.4 0.5 3 23 230 251 229 251 0.94 8 16 2.2 4.4e+02 3.7 0.4 1 11 258 268 258 276 0.79 9 16 5.1e-06 0.001 21.4 0.2 1 23 286 309 286 309 0.92 10 16 3.8e-05 0.0076 18.7 0.2 1 23 322 345 322 345 0.95 11 16 0.00056 0.11 15.0 0.4 2 23 351 374 350 374 0.95 12 16 1.3 2.6e+02 4.4 3.8 3 23 382 402 382 402 0.97 13 16 0.01 2 11.0 0.9 1 20 407 426 407 429 0.92 14 16 0.00035 0.069 15.7 2.0 1 23 435 457 435 457 0.97 15 16 3.5e-05 0.0069 18.8 1.7 1 23 463 485 463 485 0.98 16 16 0.00059 0.12 14.9 3.9 1 23 491 514 491 514 0.98
Sequence Information
- Coding Sequence
- ATGCAGCCGGCCGACCTGCCCTCGCCAACACTGCCGGAgggcgcgagctggctgaagcAGACAGACTACATGCGGGGCCGCAAGCTCACCTCCATAGACTTGGTCGGCGGCATATTCTGCAGCATCTGTCAGTCAACGTTCGCTAACAAGAAGGATTACGACTCTCATTATGTGAACCACGAGATAGGCAATGCAGATATGGGCTACACTTGTGTTGTTTGTCGCAAACAGTTCTCTAGCTACCCACCCTTCCGCAACCATTGCTACTTGATTCACTCTAAAAGCAAGCACAAgTGCATACATTGCTCCAAATCATTTTCAAAACGGTCAGTTCTGAGTAGTCACATTAAAATAACCCACAATTTCAAATGCGAGCCTTGCCAAAAACAATTTGCATCTAAAAAGGAACTAAGAACACATCAAGCTATTCACAGCTTAGACAAGCCTCCGTACAAATGTCAAGAATGTGGGGCGAGAATTGAGAGTATAGACATGTGCGAGTTCCACATCGACGAGCACTGCACAGCTGTGTATTCATGCCCCATCTGCAACGACGAGACCACTAACAACAAGCTGGATGCTGCCAAACATCTCAAGAAACACTTTGGTGAAGTACTTTTGGACCAAAATGTTACCGATTACAAAATTGGCGAGGACTGCTCCGTAGACATTCTTGGAGGAGTCCTCTGTAATTACTGCGATGAGTTATTCAAGAATAGATTAGAGTTCGACTCTCACTTTGCAACAGAACATGGAGACCAACCACTGGCGTACTCCTGTAATATTTGCAGGAAACAGTATGACGAATATCTCTTGTTCAGTGAACATTGCTACAATCATATGACCAAAGGTAGATTTGAATGCACGGACTGCGGTAAAACGTTCCCCCGTCTCTCGCTCCTCGTGACCCATACGGAGGCCTACCACTTGTCGGCCTCCGTGGATGGCTCCGTGGAGAAACCGTTCCTGTGCGGCGAGTGCGGGCGCAGCTTTAAGGGGCCCTCCCGACTGCGAGAACACACGCGCGTGGTCCACAAGACCAACACCATGCGCTGCACCGAGGAAGGCTGCGATATGGTGTTCTCATCCCTGAAGAAGCTGCTGCTGCATCAGCGATCGCACCGCTCTGACCGAGAAAACTGGTGCCGGCACTGCGGCCTGCAGTTCTCGTCCTTCGCCTCTTGTGAGCGCCACCTGGACGTGCACCGCAAGAAGCACTACGCCTGTCCCGTGTGCCGCCGCTCGTACAAGGAGAAGCACCTCATGCTCAAGCACATACCGAGTCACTTTGAATGTGTGCTGCATGTTTGTACACTATGTGGCAAGGCATTCAACATGCGCAGTCGTCTCGTACAACACTCGAAGACCCACTCCGATATCCGCGCACATAAGTGCACCGTCTGCAACAAAGGCTTCATGAAGGCCTCCATGCTCCAGCAACACCTGAACATCCACACCGGCTCCAAGCCTTACAAGTGCTCCGTGTGCTCCAAAACGTTCGCCAACTACGGCAATTGTAGCACACATATGCGCCGCATGCACAAGATCGAAAAACGAGACATCAGAAAGAAAATACTAATTCAAACAATCAACCCTCCAGAACTACCATCGCCAGCCCCAGTTACTACAATCGATAATCACGATGATAAAATGTCAATCGAATCGGGGATCGATTCAATAAGTTCGGAAAAGTTGTTAGAGGCATACTCTTGCACCGGGTCAGATGACAGCACGATGGACAATCTTGACCCGATGGTCTTACAGAAGGAATTGTGCATCTCGAATGAAAGCTCTATAATAGATGATAgtctacaatatacaaatatGCTGCTAGTAAATAACACTATATTTGAATTTGAAGTATCTCACCAAGAGAGTGCGATATTGCCGTATAATGACGCTGAGGGCAGCGGCGCGGTGCTGCTCGGGTACGGGCCCGAGTTCAACGTGCTGATAGCAGACGTGCAGGGGCACAACGACCCGCTACCTACCTGCTTGCCTACCCTGCAGCATCCGCCAGCCAGTGAGCCCCTCATCACCAAGGTATACAACCCATACGACAACGCAGACCTCAACAGTCTCCATCACTAA
- Protein Sequence
- MQPADLPSPTLPEGASWLKQTDYMRGRKLTSIDLVGGIFCSICQSTFANKKDYDSHYVNHEIGNADMGYTCVVCRKQFSSYPPFRNHCYLIHSKSKHKCIHCSKSFSKRSVLSSHIKITHNFKCEPCQKQFASKKELRTHQAIHSLDKPPYKCQECGARIESIDMCEFHIDEHCTAVYSCPICNDETTNNKLDAAKHLKKHFGEVLLDQNVTDYKIGEDCSVDILGGVLCNYCDELFKNRLEFDSHFATEHGDQPLAYSCNICRKQYDEYLLFSEHCYNHMTKGRFECTDCGKTFPRLSLLVTHTEAYHLSASVDGSVEKPFLCGECGRSFKGPSRLREHTRVVHKTNTMRCTEEGCDMVFSSLKKLLLHQRSHRSDRENWCRHCGLQFSSFASCERHLDVHRKKHYACPVCRRSYKEKHLMLKHIPSHFECVLHVCTLCGKAFNMRSRLVQHSKTHSDIRAHKCTVCNKGFMKASMLQQHLNIHTGSKPYKCSVCSKTFANYGNCSTHMRRMHKIEKRDIRKKILIQTINPPELPSPAPVTTIDNHDDKMSIESGIDSISSEKLLEAYSCTGSDDSTMDNLDPMVLQKELCISNESSIIDDSLQYTNMLLVNNTIFEFEVSHQESAILPYNDAEGSGAVLLGYGPEFNVLIADVQGHNDPLPTCLPTLQHPPASEPLITKVYNPYDNADLNSLHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -