Ogot059349.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orthosia gothica
Gene Symbol
-
Assembly
GCA_949775005.1
Location
OX459061.1:11377181-11381502[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.016 3.3 10.4 0.5 1 23 90 113 90 113 0.95
2 16 2.2 4.4e+02 3.7 0.8 8 23 194 209 185 209 0.81
3 16 0.0014 0.29 13.7 0.2 1 23 213 235 213 235 0.98
4 16 0.25 51 6.6 3.7 2 23 271 293 270 293 0.95
5 16 0.0001 0.02 17.3 0.9 1 23 300 323 300 323 0.97
6 16 9.6e-07 0.00019 23.7 1.5 1 23 329 351 329 351 0.98
7 16 0.028 5.7 9.6 1.5 1 23 357 378 357 378 0.98
8 16 0.01 2.1 11.0 1.3 1 23 460 483 460 483 0.95
9 16 8.3 1.6e+03 1.9 4.6 2 23 556 579 555 579 0.88
10 16 0.0075 1.5 11.5 0.3 1 23 583 605 583 605 0.96
11 16 0.28 55 6.5 1.8 1 23 610 633 610 633 0.94
12 16 0.5 1e+02 5.7 2.0 2 23 641 663 640 663 0.95
13 16 0.00081 0.16 14.5 2.6 1 23 670 693 670 693 0.97
14 16 5.8e-06 0.0012 21.2 3.3 1 23 699 721 699 721 0.98
15 16 9.2e-07 0.00018 23.8 3.3 1 23 727 749 727 749 0.99
16 16 1.7e-06 0.00035 22.9 0.3 1 23 755 778 755 778 0.97

Sequence Information

Coding Sequence
ATGTCGCaagATGAACAAGAAAAAGTGGGTACAGCTACGGAAATCATCAAAATAGAGCTGATAGCTGAAGAAACTGTTTCAACTAagaaaaagagaaaagaaaTTGCAGTATCTAAGAAAGAGATAATACCAATGGAAACACAGACGGCGGCGCCGGCAGCGCCTCGACCACGCGTAAAGCGACTACTACATAAGCATCTACACAATTTGAAATTAATCCTAGAATCTACTAATGCTACAATGATACTCAAACATGGAGACAAGGGTTATTTGTGTTGCTATTGCACGGAAGGTTTCGAAGAACCCATGGATTTAAAAGTACACACTCTAACGGAACATCAAAATGCTGAAATTTTTTACGGCAACCTTAAAGTCAAAGGACCGTCTATGTTCGTAGTCAAACTTGACATCACAAACCTGAAATGCATGCTTTGCAGCGTCAATATAGAATCTCTCGAAGATATATTCGTCCATCTGACAGAGAATCATAAGAAGAACTTTCACTCggatataaaaaatcaaatattcCCTTTCAAGTTTAATACGAAGCAACTGAAATGCTACCAATGTGCTGACAACGTTGTTTTCGCCACATTCAGAGCGTTACATGAGCATATGAACAAACACTACCGATACTTCGTTTGTACTGAGTGTGATGCTGGATACATTAATCAATTATCATTATCTAATCATAGACTAACTCACACGAAAGGGACTTTTCCCTGCCGACACTGCCCTGTTGTATTTGATAACATGTTGAAGAGGAGCAGTCACGAGTTACGTAGTCATAGTCGAACTGGTCATTCAAGTAGATGCCATTTATGTAATGAAAGTTTTAGGGAGCATATTGAAAAGAAATTACATCTGTCTACAGTTCATGGCGTGAATACACCGAAATATGATTGCACCACGTGTGACAAGAGCTTTTTTACCAATAGTATTCTTAGGGCGCATGTCAGACGTGTCCATCTGATGGAGAGAAAGCACAAATGTTCGGAGTGCGACAAAGCGTTCTTCGACAGTTCTGGTCTGAAGGAACATATGTTGACTCATTCTGGGGCAAAAGATTTCAAATGTAAAGTATGTTCGAAGTGGCTGCAAAAAAAGTCTCTGACTGAGCATATGAGGATTCATAACAATGACAGGCGCTTTAAATATGATCTACAAAAAGTGGCTACAGCTACGAAAATCAAAATAGAGCCGAAAGCTGAAGAAACTGTTGAACTGAAGGAACCTAAGGAagagcaaataaatataaatccagAGCCAGCGCCTCGACCACGCGTAAAGCGACTACTTCACAAGCATCTACACAATCTGAAAATAATTCTAGAATCTACTAATGCTACTATGATACTCAAGCATGGAGACAAGGGTTATTTGTGCTGCTATTGCACTGAAGGTTTCGAAGAACCCAAGGATTTAAAAGTACATACTTTAACGAAACATCAAAATGAAGAGAAATACTACGGCAACATTACAGCTACAGGACCATCTAGGTTCTTAGTCAAACTTGACATCACGAACTTGAAATGTATGCTTTGCAACATTATTATAGAATCTCTCGAAGATATATTCGTTCATCTCACAGAAAAACATAATAAGATCTTCCATACTGATATACAAAACCAAATATTTCCATTCAAGTTCAATGGGAAGCAACTGAAATGCTGCCAATGTACTAATGACGTTGTTTTCGCCACATTTAGCGCATTACACGAGCATATGCACAAACACTACCGATACTTCGTTTGTAACGAATGTGATGCTGGATTCATCAATCATATATCCTTATCCAGTCATAGCGTTACTCACACCAAAGGGACATTCCCTTGTCGACATTGCCCTGTTGTATTCGACAATCTATTCAAGAGAAGAAACCATGAGTTGCGCAGCCATAATCAAGTTGGCAAAACCAATAAATGCCATCTCTGCAATGAAGGTTTTAAAGAATATTTCACGAAAGAATTACATCTGTCCACAGTTCATGGCGTTAAGCCAAGAGAATATAACTGCACCGCTTGTAATAGGAGCTTTCCTACACATAGCTTTCTTAGCGCACATGTTAGGCGTTTCCATCTGTTGGAAAAAAGTCACAAATGTTCGGAGTGCAATCGAGCGTTCTTCAGAAATACCGACCTCAAAAAGCACATGCTGATACATACAGGGGCTAAAGATTTCAAATGTGAAGTCTGTTCAAAGTGTTTTGCTACGAGATCAACTCTGAACCAGCATTTGAGGATTCATAACAATGACAAGCGTTTTAAATGTACATTATGTGGTCAGGCATTTGTGCAAAAACCTAGCTTAACCTGGCATATGAGAGCAAAGCACGAAGATGCTTGTCCCACTTAA
Protein Sequence
MSQDEQEKVGTATEIIKIELIAEETVSTKKKRKEIAVSKKEIIPMETQTAAPAAPRPRVKRLLHKHLHNLKLILESTNATMILKHGDKGYLCCYCTEGFEEPMDLKVHTLTEHQNAEIFYGNLKVKGPSMFVVKLDITNLKCMLCSVNIESLEDIFVHLTENHKKNFHSDIKNQIFPFKFNTKQLKCYQCADNVVFATFRALHEHMNKHYRYFVCTECDAGYINQLSLSNHRLTHTKGTFPCRHCPVVFDNMLKRSSHELRSHSRTGHSSRCHLCNESFREHIEKKLHLSTVHGVNTPKYDCTTCDKSFFTNSILRAHVRRVHLMERKHKCSECDKAFFDSSGLKEHMLTHSGAKDFKCKVCSKWLQKKSLTEHMRIHNNDRRFKYDLQKVATATKIKIEPKAEETVELKEPKEEQININPEPAPRPRVKRLLHKHLHNLKIILESTNATMILKHGDKGYLCCYCTEGFEEPKDLKVHTLTKHQNEEKYYGNITATGPSRFLVKLDITNLKCMLCNIIIESLEDIFVHLTEKHNKIFHTDIQNQIFPFKFNGKQLKCCQCTNDVVFATFSALHEHMHKHYRYFVCNECDAGFINHISLSSHSVTHTKGTFPCRHCPVVFDNLFKRRNHELRSHNQVGKTNKCHLCNEGFKEYFTKELHLSTVHGVKPREYNCTACNRSFPTHSFLSAHVRRFHLLEKSHKCSECNRAFFRNTDLKKHMLIHTGAKDFKCEVCSKCFATRSTLNQHLRIHNNDKRFKCTLCGQAFVQKPSLTWHMRAKHEDACPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-