Ogot063100.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459064.1:9197415-9200270[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00036 0.072 15.6 8.2 2 23 249 270 248 270 0.96 2 11 5.9e-05 0.012 18.1 0.1 1 20 276 295 276 296 0.96 3 11 3.5e-05 0.0069 18.8 0.2 1 23 309 331 309 331 0.98 4 11 0.0078 1.5 11.4 2.3 1 23 338 360 338 360 0.97 5 11 7.8 1.5e+03 2.0 5.8 1 23 366 388 366 388 0.96 6 11 2.6e-05 0.0051 19.2 0.4 1 23 394 417 394 417 0.97 7 11 0.0053 1 11.9 1.6 2 23 423 442 422 442 0.96 8 11 1.9e-06 0.00038 22.8 0.8 1 23 448 470 448 470 0.97 9 11 2.7e-05 0.0055 19.1 2.5 1 23 476 498 476 498 0.98 10 11 5.7e-05 0.011 18.1 0.9 1 23 504 527 504 527 0.97 11 11 0.09 18 8.1 0.3 1 21 533 553 533 554 0.93
Sequence Information
- Coding Sequence
- ATGGCTAACGTAAAGAGTAGATTAAAAGCACCCAAAAGTGCATCTACAACACAGAAAAAGAaaggacataaaacaaaaaaatcgtcAACAGGTCCTAAGAAATCAAACCAGAAGAAAATTGAAACAGATTACAATGTAGTCATGAAAAGACCGTGCGCCCGCCCGGTATTGACACCAGATCAAAAgattacatttttattgcaaaatGGACACAAACTCAAGGAAAGATTTATTGCTAAACCACCtgtgaattttaaaaaaaatcctgagGTAATTGTTGAGTCCAATACTAAACCAAATGATGGGCCAAAAGGAAGTAAACATCAAAATAGCAGTTTACCTCTTATATCAAAAAGCGGAcgccttaaaaaaaataaaaactttaatatGAATCTTGTTAATAGTATTCTGAAGAATGAACTGATGATTGGAGGCAGGGAAACTCCTACAATGACAACTCCTCTGGTGGAGCCTCCTTCAAGACTTGGTGTGAACAATAACAATGACATTGAAATAACGGATAGAAATAATAAAGATCAAGAATTCACCGATGATGATGCAGTTAATTTATATGATACAATATGTACAAAATCCGAAGACATATCTGATGATGAAGACAGCTCAGAGAGTTTAAATGGAAAAACTGGTGCAAAtgatacaaaaaagaaaaaagaaccaCTGCATAAAAAGAATCCAACACATGTCACACTAAAGAATGGTGTTGTATTAAAATTAGAGTATCTTGAGTGTGACCATTGCAACAGAACATTTAACAGTAAATGTTCATTACGTAGACACATTCACTCGCATCTCGGTAATTTGCCATTTCAATGCGAGCATTGTCCTGAGCAGTTCAGTAGCCCCGATAGCTTGCAGGTTCATGTTGACTGCTTCCACAAGTCAACCGCAGATGACCCAgagttttttatttgcaatatcTGTGAAAAACCATTTCTTGACAAAGAAAACTTGGAAAAACATTTGGAAACTCACACAAAGACTGAGAATTCATTCAAATGCATTTACTGTGACAGAGTGTTTGCTTACCACATCTCGTTGATGCAGCATGAGAAGAGACACATGGTGGAAGGACGCCATCAGTGCACGCTGTGCAGTATGACTTACCGCTGTCGCAATCTCCTATACTTACATGTTAAAAGCCATTTGAAAATCAAAGATTATGTTTGTCAGTACTGTGGGAAAGAGTTTCTGAGACCGAATTCACTGAAGCGGCACGTTCAGGTAAGCCACGGTGAACATAGAATTGTGTGtccaatttgtaaaaaaaaattgaagggTCATCTAACTGAGCATATGCGTACACATGAGAAGAAGCGCCCACATGTTTGTCCGGAGTGTGGCCAGCAGTTCACACAGTCCACACAGCTGAATGTACACCGGCGCGCGCACACCGGGGCTAGACCCTATCCTTGCCGCATATGCAAACGATTTTTTTCTCATTCTAACGCTCTAATGTTGCATATCAGACGTCACACTGGAGAGAAGCCTTTCGCCTGTGCCATGTGTCCAATGTCCTTCTCTCAATTGCCACACATGAAAACTCACATGCGTAAAATACATGGCAAGGAGAACCCATACAAATGCGCCCACTGTGCTACCTTCTTCAAGCTCAAAGCAGAACTTGATGTACATGAGAAGATTTGCATATCAGGAACCGGTGCTGATGAACCAGTCAAAGGTAAAAGAAAAAGGTCCAAGAAGGGCGAGGATGAGATACAAGCGGAGTCGTCGAGGTCTCTGTCTCGCATGAGGTTCCTGTTGGCCCTTCTCTTCTCGATGATCGCTACCGAAGAGAAACTCAAATACTTAGGGTTCAATAAACGGCTCGTCGATGAAATTCTCGTCGAGTCGTTGGAGGCGATGGACCAAACGCCTTGCGAAGACGAAAGTCTAACGCCGGCCAAACGTCTTAGGAAAAACATTGAAATGTTCATAAATGGAACAGTACCCAAAAACCAGATGAAAAACTTCAAGATGGAGAACAAGTCGACTGAAGATATTCTCGAACTATTGACTACGGAGAAAGATAAGTAA
- Protein Sequence
- MANVKSRLKAPKSASTTQKKKGHKTKKSSTGPKKSNQKKIETDYNVVMKRPCARPVLTPDQKITFLLQNGHKLKERFIAKPPVNFKKNPEVIVESNTKPNDGPKGSKHQNSSLPLISKSGRLKKNKNFNMNLVNSILKNELMIGGRETPTMTTPLVEPPSRLGVNNNNDIEITDRNNKDQEFTDDDAVNLYDTICTKSEDISDDEDSSESLNGKTGANDTKKKKEPLHKKNPTHVTLKNGVVLKLEYLECDHCNRTFNSKCSLRRHIHSHLGNLPFQCEHCPEQFSSPDSLQVHVDCFHKSTADDPEFFICNICEKPFLDKENLEKHLETHTKTENSFKCIYCDRVFAYHISLMQHEKRHMVEGRHQCTLCSMTYRCRNLLYLHVKSHLKIKDYVCQYCGKEFLRPNSLKRHVQVSHGEHRIVCPICKKKLKGHLTEHMRTHEKKRPHVCPECGQQFTQSTQLNVHRRAHTGARPYPCRICKRFFSHSNALMLHIRRHTGEKPFACAMCPMSFSQLPHMKTHMRKIHGKENPYKCAHCATFFKLKAELDVHEKICISGTGADEPVKGKRKRSKKGEDEIQAESSRSLSRMRFLLALLFSMIATEEKLKYLGFNKRLVDEILVESLEAMDQTPCEDESLTPAKRLRKNIEMFINGTVPKNQMKNFKMENKSTEDILELLTTEKDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00173494;
- 90% Identity
- -
- 80% Identity
- -