Ogot041019.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459048.1:25756801-25781537[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00083 0.16 14.5 3.2 1 23 202 224 202 224 0.98 2 28 0.00048 0.096 15.2 0.4 2 21 253 272 252 273 0.92 3 28 0.00025 0.049 16.1 0.1 3 23 305 326 303 326 0.96 4 28 0.0016 0.32 13.6 0.3 1 23 376 399 376 399 0.96 5 28 0.18 35 7.1 0.3 1 23 415 437 415 437 0.95 6 28 0.0041 0.82 12.3 3.8 1 23 475 498 475 498 0.94 7 28 0.012 2.3 10.9 3.7 2 23 538 560 538 560 0.97 8 28 0.0083 1.7 11.3 0.5 1 23 610 633 610 633 0.97 9 28 0.0046 0.92 12.1 0.2 1 23 685 707 685 707 0.97 10 28 0.00073 0.14 14.7 6.0 1 23 718 740 718 740 0.99 11 28 0.073 15 8.3 0.6 2 23 752 773 751 773 0.95 12 28 0.0034 0.67 12.6 1.4 1 23 783 805 783 805 0.98 13 28 1.9 3.7e+02 3.9 7.3 1 23 834 856 834 856 0.94 14 28 0.00063 0.13 14.8 2.6 1 23 867 889 867 889 0.97 15 28 2.2e-05 0.0044 19.4 1.0 1 23 897 919 897 919 0.98 16 28 0.00036 0.072 15.6 0.3 2 23 939 961 938 961 0.97 17 28 1.2 2.4e+02 4.5 0.3 1 23 979 1001 979 1001 0.90 18 28 9.5 1.9e+03 1.7 1.9 1 9 1008 1016 1008 1030 0.81 19 28 0.007 1.4 11.5 3.2 2 23 1041 1063 1040 1063 0.95 20 28 0.017 3.4 10.4 0.2 2 23 1086 1107 1085 1107 0.95 21 28 1.6 3.1e+02 4.2 3.6 2 23 1150 1172 1149 1172 0.95 22 28 0.0028 0.55 12.8 0.2 2 23 1188 1209 1187 1209 0.95 23 28 0.51 1e+02 5.7 4.8 3 23 1217 1237 1215 1237 0.96 24 28 0.057 11 8.7 0.8 2 23 1248 1270 1247 1270 0.95 25 28 0.079 16 8.2 3.6 2 23 1287 1305 1287 1305 0.94 26 28 1.1 2.3e+02 4.6 1.5 2 20 1309 1327 1308 1329 0.91 27 28 0.54 1.1e+02 5.6 0.9 2 23 1378 1399 1377 1399 0.93 28 28 0.015 2.9 10.6 1.1 2 23 1410 1432 1409 1432 0.95
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTTGGAAAATGCAGGCTTTGCCTCAAGCTCGGCGACTTTTACTCTATCTTCACGATCGACAATGCTTTGCAGCTTGCGGAGATGGCAATGGAATGCGCCCGGGTGAAAATATACGAAGGCGATGGGCTGCCTGACAAGGTGTGCTCGGAGTGCATACAGAAGCTCAGCAGCGCACATATCTTCAAGCAGCAGTGCGAGCGAGCTGACCAGGAGCTGCGCCGCAACTATGTGCCTCCTCCTGGATTCAGCATTAGTCCACCGCCACCTAACAGACAGAGCAGCGATTCCGCCTTTTCAAATCATACCGACACCTCCAACTTAACCAAACCCCCGTCGATCATCGAAGAAAAAGTAACCCCCGTCGCCAGAACCCGCAAACGTAGTGCAGACAGCGTCGACAATGCATCCACCGGAGGCGCCTCCAGCGACTTCCGCCCCAGCGGCTCCAAACGCGTCGAGGAGCTTCGACGCACTCACAAGAAACCCAGGAGACTGTCAGGACACGTCTCGCAATTTGATTCAGATTACGAAGACAACAGCGCCTCGTACTTAGCTGAAACAGATTCCGACGAGCCCTTACTTAAAAATAGCTTCAATTGTGATCAATGCCCCAAACATTTCCAGACCCAAAGAAGTCTCTCTGTCCACAAGAGGATAcacgaaaaaaaagaaagtcttGGCGAAAATGCCGTCGTTGATATACCGTGGCAGACAGAGGACGCGACTGACGTAGAGGACAAACTGAACTGTGGTAAATGTGGCAAGACTTTCAAGTTAAAGATCATGTTGAAACGTCACCAGGAAATATGCGGGAAGACTACAAGTCCCGTCAAGATACTGCAGAAAGAGTTGCTCATCTCCTTAGAACCGATTGACGGAATGAAGAACCTGAACATTGCATGTGAAATGTGTTCTGCCAAATTCAAGACTGTTGACAATTTGGCGAAGCATATGAAGGTAGTACATGCTGCCGTCTTGAAAAGTGAAAATGTTCCTGAACAGGAAAATAGAAAGGTGTCAGTTCCATGCATGTTCTGCAAGAAGCCGTTCGACGATTACTATGTTCATAGTGCACATTTTAATAAATGCGCGAAAAGGGACGACTCTATGCCATTTGAGTGTCCCATTTGTAAGAAGGTGGTGATGAGAAAGGCCTCATATATGCTACATCTTAAGAACATGCATTTTGAGCCTCGTAAGAGTTCAGTGGAGACTGAGGCGCAGGAGTACCACGAATGTAGGATGTGCTTGAAGAAGCTTCCATCCCAAGAGCTGCTGATCACGCATTTAGCAGCTCACATGTCCAACATTGATGACAATGATGGTGGGGCTGACAATGAATCTAGGGCAAGCACTATAGACGATGGAGTGTCCATCCAATCAGTACACAGCCAAGCTTCCACTGGTCAATTTAACTGTCAAACATGTGATAAAGAATTCAAATATAGGAAAGCTCTTCAAACGCACGAGGCTAGGTGCCATTCTGAAGTACCTGTTCAGGTGAAGGTAGAGCCACCTGATAAACCGTCGACGAGTCTTCTAAGCGAGTCAGTCTACAGGCAAACTGAGTCAGAATCTAGTCAGGAAGAGGAGGACAACACGTGTGATATCTGCGAGAAACAGTTCTCGTATCGTCGGGTGCTGCTGCACCACAAGAGAACCAAGCACAACATGAGCTCAGGACATAAACGCGCCAAAATCTACCTCAAAGACTGCTCCGTACGCTGCCTCATCTGCGACCTCGACATGAAAGTCGGAGCGATTAACGAACACAATCAAACCCATATATCAAAGAACATGAAGCCTAGGAACCTCTACACGTGCGCCGAGTGCGAGGACAACTTCAAGAGCTGTTCTGCTCTTGCTAACCACATAAAGCTAATTCACAGATTAAAACAGAAGCGGATCGAAGATACCGTGAACCCGTCGGATTTTTGTGAAGTCGTTGTGACCAAAGCGGAACCCCTGGACTTTATCCAGAGTCACAACGACTTTGGCGAGGTTCCGGGCGACAGCAAGCCGCTAGTAGATCTGAGCGGATTCACCTGTCCCATCTGCAGCAAGAAGATGCCGACCCTAATATCCTTGAAAAGGCACGTCAACTGGCACACCAATGTAGGCAATAATGTGGAGAAGAAATATGAGTGTAGCGTCTGTAAAGAGGCCTTCAAGTTCCAGTGCCACTACAAGATCCACATGCGCTCGCACTACACGGACCCCAACCTGGACCCCGTGCATCTGACGTGCGCCACGTGCGGCCGCGTCAGCAAGCACCTCCGCGCCGCGCAGGCGCACATGAACTTCCATAAGCAGACGCGCTTCCAGAACAAGGACTACCAGTGCTCCATCTGTGAGAGAGTCTTTCAGCACCGCAAGGTCTACCTCTCCCATATGGCCATTCACTACAAGAAAGGCGACAGCGTTCAGAACACCATTGTAGGCGATGTCATGCCCAGCAACGCCGACAGAAGCATCTTTGACGGCACGCATACCTGTCACCTCTGTGGCAAAGTCTGCGACTCAGAAAACTCCCTCAAATGTCATCTGAGTTGGCACAACTCCAAAAGTTTCCTGTACGGCGCCCGCCACGAGTGCACCATCTGCAAAGTGAAGTTCACTAACAAACGGACACTAGAGCTTCACACCCGAGCACACTACGAAGACGACAATGGTCCCTACAAATGCACCATCTGCGGCAAAGGGTACACCGACGAAAGGTACTTCCAAAGACATGTGAAAGGACACAACTTTGACAATCAATCCCACAAAAAAAGGATCGACAAAATCAGAAAGGATAAAGTTAAATGTCCAATATGTTCGCGGTTCTACCCTGACTTGGTGAAGCTGATCCGTCACCTGCGCCGCACGCACCCCGAGAGCAAGATGATCAAGTCGGACCCCGACGCGCCGCCGCCGCTCTACTACTCGTGCAAGCTGTGCGCCAAGGTGTTTCTAGACGAGCGAAGACTGCAGTCCCACGAGGAAGCTCATTTAAGAAAGCCAGAATTCTTTAAATGCAAGTTCTGTGGAAAGAAACATATATCGCTAAAAAGCCACTCGATCCACGTCAAGGGCCATTTGGCGCAGAAACATTACGACAACCCGCTGAAGTGTCCGCACTGCGACGAGAAGTTCGTGAAGGGCTACGGGCTGCACCACCACCTGCGCGACGCGCACAACATCAACGAGAACTGGATCGCCGAGCGCTCGGAACTGCCGCTGTCCGGCCCGCTGAAGGACCTGCAGTGCTCCATCTGCATGAAGGTGCTCGCCAGCAAGGGCAACTACGAGCGCCACATCGACTACCACAACTCCTTGAGATGTAACTACTGCTTCGACTACTTCAGCTCTCTCAGGTTCCTAGAAGGACATCTCATGTTTGCGTGCGAAAAGAAAAAGCTTTTAGGCGATACCGAAGTTTACCCTAAGAAAGTGAAATGCAACATTTGTTACAAAGCATTCCATGTACAAGTGAAACTGGATTGCCACTTGCGCACGCAGCACGGCATCATAGTAGACAGGGAGCAGAGAACTGGCAAGCAAGAGATTGTCTGTGATTATTGCTTCAAAGTTTTCGAAAACGAGTATGCTCTTAGTACTCACAAGATTTACCATCGCACAATTGGCTACTATGGCTGTTTATACTGCAAAAAGAAGTTTAACACTCTGACTGTATATCGGAAACACAAGAATCATCATATGGCGCAACTCAATGTAGATAACCCGACGAAATGCGAACATTGTGAAGAGACATTTGTCGCTTTCAGAGAAATGATATACCACATGAGGGACGTGCATGGAGACGACAAGGAATGGTTTACAGAGCCCAAGGAGTCCATCGAGGAGACTTGCCCCATCTGTAACAAACGATTCTACAATCTTCACAAGCATATGACTTACCATGAAGAAAACAAGTGCAAGAAATGCAATGAATATTTCTACTCCAGGGCGGACTTCGATGGTCATCTTTGCGCTATTGAAAGTGATGACGAAGGCACGGCATACGTGGGCACCGAGGGAACGTTCCAGTACGAAGAGTGCAGGTTCTGCTTCAAACCAATCACCAAGAAGAGCACCAAGCGGCTTCACAACCAGATACACAAAGGCTCCGGCTCTATATCCTGTAGATTCTGCTCACTGAAGTTTAAAACTATGGACGCCTTTAACATACACGCTTTCTCTCATAGAAGCAGAAAGTACAATAAGAAGCCGATAAAATGTCGAAAATGCGGCGAAAAGTTCTTTAAGTACGGACCATTCATGAAGCACATGAAGTTAGTTCATAAGTGTATGAAGAAACTTCATTACAGAGCAGTTGTGAAGCCGGATAAATGTGTCGTTTGTGGAGATGACTTCCCGAACTTGCACAATCATTACCGAGCACATCTTCTGAACCAGTGTCAGACTTGTCTCAAATACTTCACTTCGTACAAGGTGATCTCTGCGCACGAGTGCGACAAAGAGGACTCCGACCCGTCGAAGGTGTTCACATGTGACGCGAACTTGAACGAGCTGATAAAAACATATGTTCCTATGGATGAGAAGGATGATGAGAAGTACTACGGCCACACCGATgtcgaagaagaagaagaagacgatATAATACCACAAGTAgttggagaggaagaggaaagTCAGGAGAGTCAAGAGTTTAAAGACATCCCTATGCTCCAGTCGCCGATAATTTCGGATGTGCTGTCGCTGTACAAAGCAGAGATGAATGGGTTGGGTGAGGTGGATGGCGTGGTGGATAATATGAATGAAGTGGTTGATATAACGGATGATGACTCGGTGGATGTTGACGATTCCGTTATACCAGTGGTTGTCGTTATAGATGATGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTIDNALQLAEMAMECARVKIYEGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTDTSNLTKPPSIIEEKVTPVARTRKRSADSVDNASTGGASSDFRPSGSKRVEELRRTHKKPRRLSGHVSQFDSDYEDNSASYLAETDSDEPLLKNSFNCDQCPKHFQTQRSLSVHKRIHEKKESLGENAVVDIPWQTEDATDVEDKLNCGKCGKTFKLKIMLKRHQEICGKTTSPVKILQKELLISLEPIDGMKNLNIACEMCSAKFKTVDNLAKHMKVVHAAVLKSENVPEQENRKVSVPCMFCKKPFDDYYVHSAHFNKCAKRDDSMPFECPICKKVVMRKASYMLHLKNMHFEPRKSSVETEAQEYHECRMCLKKLPSQELLITHLAAHMSNIDDNDGGADNESRASTIDDGVSIQSVHSQASTGQFNCQTCDKEFKYRKALQTHEARCHSEVPVQVKVEPPDKPSTSLLSESVYRQTESESSQEEEDNTCDICEKQFSYRRVLLHHKRTKHNMSSGHKRAKIYLKDCSVRCLICDLDMKVGAINEHNQTHISKNMKPRNLYTCAECEDNFKSCSALANHIKLIHRLKQKRIEDTVNPSDFCEVVVTKAEPLDFIQSHNDFGEVPGDSKPLVDLSGFTCPICSKKMPTLISLKRHVNWHTNVGNNVEKKYECSVCKEAFKFQCHYKIHMRSHYTDPNLDPVHLTCATCGRVSKHLRAAQAHMNFHKQTRFQNKDYQCSICERVFQHRKVYLSHMAIHYKKGDSVQNTIVGDVMPSNADRSIFDGTHTCHLCGKVCDSENSLKCHLSWHNSKSFLYGARHECTICKVKFTNKRTLELHTRAHYEDDNGPYKCTICGKGYTDERYFQRHVKGHNFDNQSHKKRIDKIRKDKVKCPICSRFYPDLVKLIRHLRRTHPESKMIKSDPDAPPPLYYSCKLCAKVFLDERRLQSHEEAHLRKPEFFKCKFCGKKHISLKSHSIHVKGHLAQKHYDNPLKCPHCDEKFVKGYGLHHHLRDAHNINENWIAERSELPLSGPLKDLQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLMFACEKKKLLGDTEVYPKKVKCNICYKAFHVQVKLDCHLRTQHGIIVDREQRTGKQEIVCDYCFKVFENEYALSTHKIYHRTIGYYGCLYCKKKFNTLTVYRKHKNHHMAQLNVDNPTKCEHCEETFVAFREMIYHMRDVHGDDKEWFTEPKESIEETCPICNKRFYNLHKHMTYHEENKCKKCNEYFYSRADFDGHLCAIESDDEGTAYVGTEGTFQYEECRFCFKPITKKSTKRLHNQIHKGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCGEKFFKYGPFMKHMKLVHKCMKKLHYRAVVKPDKCVVCGDDFPNLHNHYRAHLLNQCQTCLKYFTSYKVISAHECDKEDSDPSKVFTCDANLNELIKTYVPMDEKDDEKYYGHTDVEEEEEDDIIPQVVGEEEESQESQEFKDIPMLQSPIISDVLSLYKAEMNGLGEVDGVVDNMNEVVDITDDDSVDVDDSVIPVVVVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785388;
- 90% Identity
- iTF_01230875;
- 80% Identity
- -