Ogot059275.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459061.1:10389661-10412166[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 6.5 1.3e+03 2.2 0.2 1 23 408 431 408 431 0.87 2 20 0.98 1.9e+02 4.8 0.9 2 23 457 479 456 479 0.95 3 20 0.038 7.6 9.2 3.1 2 23 502 523 501 523 0.96 4 20 0.0074 1.5 11.5 1.7 1 23 527 549 527 549 0.96 5 20 0.00092 0.18 14.3 0.6 1 23 554 577 554 577 0.97 6 20 0.057 11 8.7 0.7 2 23 585 607 585 607 0.91 7 20 0.00019 0.037 16.5 2.0 1 23 614 637 614 637 0.97 8 20 0.0031 0.62 12.7 2.1 1 23 643 665 643 665 0.97 9 20 0.00018 0.037 16.5 2.8 1 23 671 693 671 693 0.98 10 20 8.5e-05 0.017 17.6 0.5 1 21 699 719 699 720 0.97 11 20 2.1 4.1e+02 3.8 0.4 1 23 797 820 797 820 0.91 12 20 0.26 52 6.6 0.5 2 21 846 865 845 868 0.93 13 20 0.0072 1.4 11.5 0.6 2 23 891 912 890 912 0.96 14 20 0.0054 1.1 11.9 3.0 1 23 916 938 916 938 0.96 15 20 0.017 3.4 10.3 0.7 1 23 943 966 943 966 0.96 16 20 5 9.9e+02 2.6 0.3 2 12 974 984 974 996 0.78 17 20 0.0029 0.58 12.8 2.8 1 23 1003 1026 1003 1026 0.95 18 20 1e-05 0.002 20.5 1.3 2 23 1033 1054 1032 1054 0.97 19 20 0.00011 0.021 17.3 5.4 1 23 1060 1082 1060 1082 0.99 20 20 0.0013 0.27 13.8 0.1 1 23 1088 1110 1088 1110 0.97
Sequence Information
- Coding Sequence
- ATGTCGGCAGAGAAAACTGAGATAGAGACGTTTTTCGGTAGATGTAGGTGTTGTCTCACCTATGGTTACTTAAAAAACATGTGGGTAGAACATAAATTTCAAGGAGAAGCCGAGGTTTACGCAGAAATGCTTGTCCAATGTTTTGCACTGGCGTTGGAGCACTCAGAGGAAACGATGGAACAAGATCAGATATGTGAGCAGTGCATATGTCGGTTGCGAGACGCAAACGATTTTAAAAAGGTGGTCATGGATTCACAAGAGGAGCTGTTGCAGGAGATGGAAGAAGAAAGAAATCTAAACATCAAAGAAGAGAGACTACAAGAGGACTTGCTGGACATACAGGACAGTGATGGAGACACCGCTGACACTATATACATAGACACTGAGTACACCGCTGACAGTATGAACATTGTCAAAGATGAGACGGAGTACGAAGAGATCGAGTATTTGGAGGAGGAAGACACTGGAGTGGCTAATGATGCTGTTGATGCTGACGCCTCACATTTAACGGATAAGTGTAAAACGGCCATAACACGGAAAAAACATCGCCGTCAACCAGAACTAGATGAAGAGGCCGAAGCCGAAGAAGTACCAAAACGTAAATGGCCCAAAAAGCTGCCCAAGTCCGAACGGCTCAAGACATACAAGCAATACTCCGAGGCTGACCTACGGAAATGTTTGGAAGAAGTGAGGAATAATAAAATGTCTGCTAGTGAAGCATCCCTGATGTATGATATACCGAAGAAGACTATTTGTGCCAAGATCAAACTGGATCCTAATGATGTCCTGATTGACAATACAACGAAATCCAAATTGCGACGATCTAAAAGGAAACCGAGGACAAAGCTCACCATATTTAAAACCAAACCGGTATTTATGgatggaaaaactaaaaaactaagcGAGCGGAACAAATTAAGAGCAAAAACCTTGGGAAAGGAGGCCGGAACAATAAAAGACGACGATATTGATAAAGAAACAAAAGCAATCAAGATTAATTTGAAGCCTGAAATAGAAGAAATGAAAATCCCTGTAAACGCCGCCCAAGTCAGAACGCGATACAAGGCTATAGTCAACGACAAATTCAAGAAAGGAAACGAGACAGAACCCGAGAAAATCGAAATTAACGAAATGAATAAACACAAAGACAATATAAGGATTATATTGCAAAATTCTAACGCGACCATCATTAGAGGATATTGGGGTTACCGGACGACCGGTTATTCTTGTAACTTTTGCGCCGAACAGAGAGACCTACCTTCAGAATTGAAACAGCATAACTTAGAAGTTCATAGCAATGCAGGAGACGAAGCTATCAAAGTGAAATATGTATCCGACTTAGTTATAAGGCTAGACATTACCGATCTCAAATGCAAACTATGTAACGCCAGTATAAATTCATTAGAAAAATTCATGGATCACTTAACTAAAAAACATTCACAACGTATACACACAGATATAAAAAATCACATCATTCCTTTTAAATTAAACACAGATCCGCTTCAATGTTGTATTTGCAAGAAAGAATATAAGTATTTCAAGCTACTTTCAGAGCATATGAGCGAGCATTATAGAAACTACGAATGCTCATTTTGCGAGCGTGCGTTCATAAACAAGCAGTCAATGCAAACACACTCTTACAGACACAGAAAAGGTGTCTTCAAATGCGCACATTGTCCGAAAGTTTTCGACTCGCGACCGAATAGAAGCGTGCATGAGCGGGTAGTACACGCATTATCGAATAAAACTCGCAAATGTTCGTTCTGTAACGAGAAATTCGGGACAAAAGACATGGTTCAAAACCATGAGGTCAAAGCCCATGGAGCCGAACCGCCAGTTTTTTCCTGCCAAGCCTGTAACAAGTCTTACACCAGTCAAGGTTCTCTGTTAACTCACAGAAGGCGCTACCATTTAATGATACGACCGCATAAATGTTCCTATTGCGAAATGTCGTTTTTCTCTAAGATAGAGCTGAGTTCCCATGTAGTTACTCATACTAAGACGAGGGATTTTCAGTGTGATCTTTGTACGAAATCGTTTGGGACGCGGTGTAGTCTTAATCAGCATGTTAGGGGGCATATGGACGATAGGAGGttcaaatgtgacatttgtgagaGGACCTTCGTGCATCGGACCGCTTGGAGAGTTCATATGAGGAATGCACAAAGGGATAAAAACGAACTGGATGCTAAAGGTAACAAAAGTAGACCAAGCCAGTTACAGAAAAATGAGGCCCACTGCAGTAAAACCACTGTGGATAGCGATTATGAGAAAGATATCAGCAAAACACAGAAAAACAAGAATCTTCTAGCAAAATTCAAAAAGACCGTACGGACTATACTAAGATGCACGAACGCTACACCAATCCGAGGCCACTGGGGCATCGGATACGCTTGCATATACTGCAAATACCAAACCCCTGAACCAACCGAGCTAAAAACCCACACACTAAAAACCCATTCGGAAAACGCTGATGAACTTAACAACCTCAAATACGTTGCAGACATGATCGTCAAACTAGATATTACAGACCTCAAATGCACGATATGTGACCAAAGTTCTGAGACCCTTGAAGAAATCATGAACCATATAAACTGTATTCACAAAGAACCAATACATTTTACCATCACCAATCACATCGTCCCATTTAACTTCAGAAGTGAGGAAGTAACTTGCGCTCTTTGCGAGAAACAGTTCAATTATTTCAAACAACTATATGAGCATATGAATGagcattttcccaactataaATGTAATAAATGCGAGCGAGTTTTTATTAACCAGCGTTCTCAACGAACGCATTCGACAAGACATAAAGTCGGCACGTTCATCTGCGCGTTTTGCTCCAAAATCTTCAACACACGAATCAAAATGAAAGAACACGAAAGAGTTTTACACTTGAAAGGTTCAAAGACTCGTAAATGTGGGTACTGCGATGAAAAGTTCATGGATGTTGTAAAAAGGTCTGAACATGAAGTTAAAGAACACGGAGCTCAAGTCCCGAAATACGAATGCAAAGCTTGTGGGAAGTTTTACGACAGTCGCCGTTCTCTAACGAACCATGTGAATCATTATCATTTACAGCTTCGACCTAATAAGTGCCCGGAATGTGACAAAggattttataacaaaaatgaGTTGAAACGACACAGGGTGAAACATACCAAGGTCAAGGAGTTCCAATGCTCTATCTGTTCAAAATTCTACTGTTCTAGGAATACTCTTAAAAATCATATGAAGATACATGATAGCGATAAGTGTTTTACTTGTGAGAGATGCGGGGAAACTTTTATACAGAAGAATGTTTGGGCGAATCATATGGCGAACCATGCGGAAGATGACAAGAAAAAAAGCGCTGAAAATGCTTAG
- Protein Sequence
- MSAEKTEIETFFGRCRCCLTYGYLKNMWVEHKFQGEAEVYAEMLVQCFALALEHSEETMEQDQICEQCICRLRDANDFKKVVMDSQEELLQEMEEERNLNIKEERLQEDLLDIQDSDGDTADTIYIDTEYTADSMNIVKDETEYEEIEYLEEEDTGVANDAVDADASHLTDKCKTAITRKKHRRQPELDEEAEAEEVPKRKWPKKLPKSERLKTYKQYSEADLRKCLEEVRNNKMSASEASLMYDIPKKTICAKIKLDPNDVLIDNTTKSKLRRSKRKPRTKLTIFKTKPVFMDGKTKKLSERNKLRAKTLGKEAGTIKDDDIDKETKAIKINLKPEIEEMKIPVNAAQVRTRYKAIVNDKFKKGNETEPEKIEINEMNKHKDNIRIILQNSNATIIRGYWGYRTTGYSCNFCAEQRDLPSELKQHNLEVHSNAGDEAIKVKYVSDLVIRLDITDLKCKLCNASINSLEKFMDHLTKKHSQRIHTDIKNHIIPFKLNTDPLQCCICKKEYKYFKLLSEHMSEHYRNYECSFCERAFINKQSMQTHSYRHRKGVFKCAHCPKVFDSRPNRSVHERVVHALSNKTRKCSFCNEKFGTKDMVQNHEVKAHGAEPPVFSCQACNKSYTSQGSLLTHRRRYHLMIRPHKCSYCEMSFFSKIELSSHVVTHTKTRDFQCDLCTKSFGTRCSLNQHVRGHMDDRRFKCDICERTFVHRTAWRVHMRNAQRDKNELDAKGNKSRPSQLQKNEAHCSKTTVDSDYEKDISKTQKNKNLLAKFKKTVRTILRCTNATPIRGHWGIGYACIYCKYQTPEPTELKTHTLKTHSENADELNNLKYVADMIVKLDITDLKCTICDQSSETLEEIMNHINCIHKEPIHFTITNHIVPFNFRSEEVTCALCEKQFNYFKQLYEHMNEHFPNYKCNKCERVFINQRSQRTHSTRHKVGTFICAFCSKIFNTRIKMKEHERVLHLKGSKTRKCGYCDEKFMDVVKRSEHEVKEHGAQVPKYECKACGKFYDSRRSLTNHVNHYHLQLRPNKCPECDKGFYNKNELKRHRVKHTKVKEFQCSICSKFYCSRNTLKNHMKIHDSDKCFTCERCGETFIQKNVWANHMANHAEDDKKKSAENA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -