Basic Information

Insect: Orthosia gothica
Gene Symbol: -
Assembly: GCA_949775005.1
Location: OX459069.1:5417334-5420501[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.9e-06 0.00078 21.8 1.7 1 23 217 239 217 239 0.98

2 9 3.7e-08 7.4e-06 28.1 1.6 3 23 247 267 245 267 0.98

3 9 0.00013 0.025 17.0 0.3 1 23 273 295 273 295 0.98

4 9 1.4e-05 0.0027 20.1 1.7 1 23 301 323 301 323 0.99

5 9 2.8e-05 0.0056 19.1 1.7 2 23 506 527 505 527 0.96

6 9 3.6e-09 7.2e-07 31.3 1.6 1 23 533 555 533 555 0.98

7 9 0.0031 0.61 12.7 0.6 3 23 563 583 561 583 0.97

8 9 7.9e-05 0.016 17.7 1.5 1 23 589 611 589 611 0.99

9 9 0.024 4.8 9.8 0.8 1 23 617 641 617 641 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.9e-06	0.00078	21.8	1.7	1	23	217	239	217	239	0.98
2	9	3.7e-08	7.4e-06	28.1	1.6	3	23	247	267	245	267	0.98
3	9	0.00013	0.025	17.0	0.3	1	23	273	295	273	295	0.98
4	9	1.4e-05	0.0027	20.1	1.7	1	23	301	323	301	323	0.99
5	9	2.8e-05	0.0056	19.1	1.7	2	23	506	527	505	527	0.96
6	9	3.6e-09	7.2e-07	31.3	1.6	1	23	533	555	533	555	0.98
7	9	0.0031	0.61	12.7	0.6	3	23	563	583	561	583	0.97
8	9	7.9e-05	0.016	17.7	1.5	1	23	589	611	589	611	0.99
9	9	0.024	4.8	9.8	0.8	1	23	617	641	617	641	0.95

Sequence Information

Coding Sequence: atgctgttgaaacttgacACGACAACACCATACGTCCTCTACAAAGATGGCGTGGAGCGCGCGCCCCCGGGCACGCAATGGGGTGGCGGAGTGCTGGACGGCGGCTACCAGCCCATGCAGCACCAGAGCCCCGGCGGGCCCTCGCCGCAGCCCGAGCCCCAGCTCGCATCGCCCGCGCCTTCGCCCTATCCCCCCGCGCCACCGCCCTCAGACCCCACCGGTGCCGCAGAGGACGCCGCCCAGCAACTCGCTCAGCAACAGGCACAGCAGCAAGCGCAACAACAACAGCAACAGCAGCAGCAACAGCAACAAACTTCTCCCGAACACATGCAAGTGGAGCAACAGCTCCAGAGCCAGACTCAACCCCAGCCTCCCTCGCAGGATCACCTGGACCGCACGCCATGCTTCGTCCCACAGCCGGACCTGCAGCAGCAGTACACGCCCTACTTCAAGGAAGCGCGACCAACCGGGCACATGCTCGGCACGGGCGGCTTTCCGCTACACTACCTGAAACAAAATGGTGGTGTGCTGTCCTTAGAAGGTCCTCTTGACCAGTACGCGGCACCCGATCTCCGCCACTTGCCAGACATAGTGCAGCCTGAGCCGCCAAAGCCACGGAAGCACAACCCAAACTCAGAGCTACGCCTGTTCAAGTGCCTGACGTGCGGCAAAGACTTCAAGCAGAAGTCAACCCTGCTGCAGCACGAGCGGATCCACACAGACTCGCGGCCGTACGGGTGTCCGGAGTGCGGCAAGCGGTTCCGGCAGCAGTCGCACCTGACGCAGCACCTACGCATCCACGCGAACGAGAAGCCGTACGCGTGCGTGTACTGCCCGCGCTCGTTCCGGCAGCGCGCCATCCTCAACCAGCACCTGCGCATCCATTCCGGTGAGAAGCCATAtacgtgcggcgagtgcggcaaACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATTATACCCCCCCGCGCCCCCGCAAAACCGCGCGCGCCGCCCGCACTGACCCCGGTCACTGCCGCCGGCGCCCGCGCCTCCCGCCGCCCCCCGCACCGTCGATTCGGTCTCGCATCCATTGGCCTTCCTACCAAACAAATTCTCGGTTCCCTCGTCGCCCGTATAACTCAGGGCGCTCGCGAGACGCGGAACCGACCGCCGGACGCTCCCGTAACCGTTTCCAATGTCTCGCCGCATCTCATCTTCAAGAACGGGACGACGCCGACGCTGTGGCCCCAGGACGTACCCTTCCCGGGGGACGAGAACAAAGAAGAGATCCAGTCGCAGTTCGGCGACGCGGACGGACAGAACGGCGACCCGCGCGGCTCCTGCTTCTCACCAGGTGACACTGCGCAGTACCCTGCTTACTTCAAAGACACGAAAGGTCTGAATCACTCAGTCTTCAGCACGGGGCTTTCACTGCAATATTTAAAGGGCGGCAAGCTACCAGACGTACTCGGGGGGCGGGCAATGCCTCTATACGTGCGCTGCCCGATTTGCCAGAAGGAGTTTAAACAGAAGTCGACGCTGCTTCAGCACGGGTGCATCCACATAGAGTCACGTCCATACCCCTGCCCCGAGTGCGGCAAGCGCTTCCGCCAGCAGTCGCATCTGACGCAGCACCTGCGCATCCACACCAATGAGAAGCCGTACGGCTGCGTGTACTGCCCGCGCTTCTTCCGTCAGCGAACCATCCTCAACCAGCACTTGCGTATCCACACCGGCGAGAAGCCGTACAAGTGCACCCAGTGCGGCAAGGACTTCAGGCAGAAGGCGATCCTAGACCAGCACACGCGGACGCACCAGGGCGACCGGCCCTTCTGCTGCCCCATGCCCAACTGCCGGCGGCGGTTCGCCACGGAGCCGGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACGCGGCCAAGGCCCGGCGCGCCGACGCCGCCAAGACCCCGCGTCCGCTGCCGCCCGCCGCCGCCGTGGTGAAGCCGGAGCTGTACTTCCCACAGTGCTATGCGCCGCCGTTCCAGCAGTTCGGCGGCGGCGCCGAGTTCAAGCCGACGTTGGGGCCGGGCGCGCCGGTGGCGTGCCTGCCGGCGCAGTGA
Protein Sequence: MLLKLDTTTPYVLYKDGVERAPPGTQWGGGVLDGGYQPMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPSDPTGAAEDAAQQLAQQQAQQQAQQQQQQQQQQQQTSPEHMQVEQQLQSQTQPQPPSQDHLDRTPCFVPQPDLQQQYTPYFKEARPTGHMLGTGGFPLHYLKQNGGVLSLEGPLDQYAAPDLRHLPDIVQPEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIIPPRAPAKPRAPPALTPVTAAGARASRRPPHRRFGLASIGLPTKQILGSLVARITQGARETRNRPPDAPVTVSNVSPHLIFKNGTTPTLWPQDVPFPGDENKEEIQSQFGDADGQNGDPRGSCFSPGDTAQYPAYFKDTKGLNHSVFSTGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADAAKTPRPLPPAAAVVKPELYFPQCYAPPFQQFGGGAEFKPTLGPGAPVACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00428362;
90% Identity: iTF_00888518;
80% Identity: -