Basic Information

Insect: Orthosia gothica
Gene Symbol: -
Assembly: GCA_949775005.1
Location: OX459044.1:9366022-9375940[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.5e-05 0.013 17.9 3.1 2 23 155 176 154 176 0.97

2 12 0.029 5.7 9.6 0.4 1 23 181 203 181 203 0.96

3 12 0.0012 0.24 14.0 0.2 2 23 226 247 225 247 0.97

4 12 0.0019 0.38 13.3 5.0 2 20 255 273 254 276 0.93

5 12 1.7e-05 0.0034 19.8 0.9 1 23 282 304 282 304 0.98

6 12 1.4e-06 0.00027 23.2 2.5 1 23 310 332 310 332 0.97

7 12 1.8e-07 3.5e-05 26.0 1.3 1 23 338 360 338 360 0.96

8 12 0.00011 0.022 17.2 0.3 1 23 366 388 366 388 0.95

9 12 3.6e-05 0.0071 18.8 1.5 1 23 394 416 394 416 0.96

10 12 0.046 9.1 9.0 7.4 1 23 422 444 422 444 0.98

11 12 5.9e-07 0.00012 24.4 1.3 1 23 450 472 450 472 0.99

12 12 0.00053 0.1 15.1 1.5 1 23 478 500 478 500 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.5e-05	0.013	17.9	3.1	2	23	155	176	154	176	0.97
2	12	0.029	5.7	9.6	0.4	1	23	181	203	181	203	0.96
3	12	0.0012	0.24	14.0	0.2	2	23	226	247	225	247	0.97
4	12	0.0019	0.38	13.3	5.0	2	20	255	273	254	276	0.93
5	12	1.7e-05	0.0034	19.8	0.9	1	23	282	304	282	304	0.98
6	12	1.4e-06	0.00027	23.2	2.5	1	23	310	332	310	332	0.97
7	12	1.8e-07	3.5e-05	26.0	1.3	1	23	338	360	338	360	0.96
8	12	0.00011	0.022	17.2	0.3	1	23	366	388	366	388	0.95
9	12	3.6e-05	0.0071	18.8	1.5	1	23	394	416	394	416	0.96
10	12	0.046	9.1	9.0	7.4	1	23	422	444	422	444	0.98
11	12	5.9e-07	0.00012	24.4	1.3	1	23	450	472	450	472	0.99
12	12	0.00053	0.1	15.1	1.5	1	23	478	500	478	500	0.97

Sequence Information

Coding Sequence: ATGCTGCAAGAGCTTGCAAACGAAAGCAAGAAGGTTGGATTGACTATGAATGCTGCAAAGACCAAAATTATGACAAACGGATCAGAAGTAACAGTGGACAAAGGGGACAGATTACCAAAGAAAATATGCAATAGCTGCTACAGTTCTTTACTAAACTTTCACAAATTTAAGACCACAGCACTAAATGCTGAAGCTGAGTTGAGAGAGCATCTTGCAAACATGATTGATATATGTAAAAAAGATGATGAAACCATAAATAATGGCAATTTGGTCAttgaaattaaagttaaaaatgaatataatcaatatcaaatgaaaaacaaaaacttagatGATAGTATTGATTCTGAAACGGAAATGAAAGAAGAAATCAAACCATTTAACATAGTGCCAAAGTACTCAGATATATCAGATGCAAGTCAGCTTGAAGAAAACCAAGTGAAAACTccaaaaatagaattaaaatgTGAAGCTTGTGAAAAAAAATTTAGGtcgcaaaaaaaacttaactcccACCAacgaaaacataaacataaacaataCGTCTGTATTATCTGTGCAAAGGTTTTTCAACGCAATTACAAATATATGGAACATTTAGTTACACATGACAGAATAGATTCTCAAAATAAATCCTATATGACCACAGCAAACCATAATACAGGCCAAAAAATACAATGTGACGTTTGTTCAGAAAGTTTCATGTCCGTGAACTCTTTAGCAGCTCATAAAAGGAAACATGCATCGAAAGATAGAGTTCTATCATGTTCAGTGTGCAGCAAAGTATTTAAAAAGACCTCCCATTTAAAACGACATGAACTATGTCATGAGATCAACCGGCCATTCAAATGTTCTTCTTGCCCAAAGTCGTTCACTAACGAAGCTACATTAACAGAACATGAGAACAAGCATAATGGAATAAATCGACATAGCTGTCCTATATGTTCAAAGAGTTTTGCTCACCTATCTACATTAAACAATCATATAAAGATACATACAAGAGTGAAGCCGTACTTATGTCCTACTTGTGGGAAGAGGTTTGATTCCAGCACTAATTTAAACCAGCATATGAAGAGGCATTTAGGATTGAAGGTGTTTGCGTGTAAATTGTGTCCCAGGAAGTTTGTTAGTAAAGGTGAACTAAAATCCCATGGTGTAACCCATACTGGCGTAAAATCGCATGCTTGTGATGAATGCAGTGCAACGTTCACTACGGCCAGTTCTTTGAACAAACACAAGCTGAGGCATCAGGGTATCAAGCCTTATCACTGTGATGCATGTCCTATGAAATTTACATGCAAAGACCATCTAAAGCGGCATACCAGAATACACACGGGCGAAAGACCTTACAAGTGCGACCTATGTGAACGATCTTTTACTCAAAGCGGTGACTTGCTTAAGCATAGGCGGTCACACTTGGGAAATAATCCGTATAAATGCACCCAATGCAGCCAAAGCTTCAGACTAATGACGGAACTCCGCCAGCATATATCTGAACACTTCATTTCTTCACAACTGGCAGCATTGAAAGTCACGAGTACTGACGAACCTCAAGTCCTGACtgttagtaataataattcTACAGTGGGTACCCCCGTTACTAATGGTCCATTTTCCTGTGGTACCTCACAGGAAAATGTTGTAATTCAAGCCAGTAGTGATAAGAAGATAgaataa
Protein Sequence: MLQELANESKKVGLTMNAAKTKIMTNGSEVTVDKGDRLPKKICNSCYSSLLNFHKFKTTALNAEAELREHLANMIDICKKDDETINNGNLVIEIKVKNEYNQYQMKNKNLDDSIDSETEMKEEIKPFNIVPKYSDISDASQLEENQVKTPKIELKCEACEKKFRSQKKLNSHQRKHKHKQYVCIICAKVFQRNYKYMEHLVTHDRIDSQNKSYMTTANHNTGQKIQCDVCSESFMSVNSLAAHKRKHASKDRVLSCSVCSKVFKKTSHLKRHELCHEINRPFKCSSCPKSFTNEATLTEHENKHNGINRHSCPICSKSFAHLSTLNNHIKIHTRVKPYLCPTCGKRFDSSTNLNQHMKRHLGLKVFACKLCPRKFVSKGELKSHGVTHTGVKSHACDECSATFTTASSLNKHKLRHQGIKPYHCDACPMKFTCKDHLKRHTRIHTGERPYKCDLCERSFTQSGDLLKHRRSHLGNNPYKCTQCSQSFRLMTELRQHISEHFISSQLAALKVTSTDEPQVLTVSNNNSTVGTPVTNGPFSCGTSQENVVIQASSDKKIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -