Ogot059352.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459061.1:11397649-11409308[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00065 0.13 14.8 1.3 1 23 90 113 90 113 0.95 2 21 0.17 35 7.2 0.2 2 23 186 209 185 209 0.90 3 21 0.0021 0.41 13.2 0.1 1 23 213 235 213 235 0.93 4 21 0.33 66 6.3 1.3 1 23 240 263 240 263 0.93 5 21 0.00016 0.032 16.7 0.8 1 23 366 389 366 389 0.95 6 21 1.3 2.6e+02 4.4 1.4 7 23 469 485 461 485 0.83 7 21 0.00018 0.037 16.5 0.1 1 23 489 511 489 511 0.98 8 21 0.71 1.4e+02 5.2 0.6 1 23 516 539 516 539 0.86 9 21 0.027 5.4 9.7 1.9 2 23 547 569 546 569 0.96 10 21 0.0012 0.24 13.9 0.3 1 23 576 599 576 599 0.97 11 21 3.1e-06 0.00061 22.1 1.5 1 23 605 627 605 627 0.98 12 21 0.042 8.4 9.1 0.9 1 23 633 654 633 654 0.98 13 21 0.00095 0.19 14.3 0.7 1 23 747 770 747 770 0.95 14 21 0.27 54 6.6 0.5 2 23 843 866 842 866 0.88 15 21 0.0012 0.23 14.0 0.6 1 23 870 892 870 892 0.96 16 21 1.8 3.6e+02 4.0 1.9 1 23 897 920 897 920 0.86 17 21 0.026 5.2 9.7 1.0 2 23 928 950 927 950 0.96 18 21 0.0013 0.26 13.8 0.4 1 23 957 980 957 980 0.97 19 21 3.1e-06 0.00061 22.1 1.5 1 23 986 1008 986 1008 0.98 20 21 0.041 8.2 9.1 0.9 1 23 1014 1035 1014 1035 0.98 21 21 3.4e-07 6.7e-05 25.1 0.9 1 23 1041 1064 1041 1064 0.96
Sequence Information
- Coding Sequence
- ATGACGCCTGGTCGAAGGCGAGTCGATATACACCATAAAGTGGCTACAgctacgaaattaaaaacagAACCGAAAGCAGCAGAAGCGGGTTCACCTAAGATTAAGCAAAAAGAAACTGCAGTACCCAATGAAAAGAACACAAAACTAAAACCACAGACAGCTCCTCGACTACGCGTAAAGCAACTACTACACAAGCATCTACACAATCTGAAAGTTATCCTAGAATCTACTAATGCTACAATGATACTCAAGCATGGAGACAAGGGCTATTTGTGCTGCTATTGTCCGAAAGGTTTCGAAAAACCCATGAATTTAAAAGAACACACGTTAACGGAACAtcaaaatgaagaaaaattctACGGCAACGTTAAAGCCCAAGGATCGTCTACATTCTTAGTCAAACTTGACATCACAAACCTGAAATGTATACTCTGCAGCGTCAATATAGAATCTCTCGAAGATATGTTCGTCCATCTAAAAGAGAAACATACTAAAAACTTTCATACTGATATAAACAATCAAATATTACCTTTCAAGTTTAATGCGACGCAACTGAAATGCTACCAATGTCCTTATGACGTTGTTTTCGCCACATTCAGAGCGTTACAGGAGCATATGAACAGACACTACCGATACTTTGTTTGTAACGAGTGTGATGCTGGATTCATCAATAAATTGGCATTATTTAGACATATACCCACTCACGCGAAAGGGACTTTTCCCTGCCGGCATTGTCCTGTTGTATTCGAAACCGCTAGGAAGAGAAGCAATCACGAGTTACGTTATCACAGTCGAACTGGCTATCCAAACAGATGCAATTTATGTAATGAAGataaacaacaaaaagtgaCTCCAGCTACGGAAATCAAAGTACAACTGAAAGCTGAAGAAACTGTTTCACCTAAGCATGTGCTAAAAGAAATTGCAGTACCTAAGAAAGGGATAATAGTAATAGAACCACAGACGACGGCGGCGGCAGCGTCTCAAAAACCCCGCCCACGCGTAAAGCGACTACTACATAAACATCTACACAATTTGAAATTAATCCTAGAATCTACTAATGCTACAATGATACTCAAACATGGAGACAAGGGTTATTTGTGCTGCTATTGCCCGAAAGGCTTCGAAGATCCCAAGGATTTAAAAGTGCACACTTTAACGGAACATCAAAATGAAGAGAAATTGTACGGCAACATTTCAACTAAAGGACCATCTAGTTTCCTAGTCAAACTTGACATCACAAACCTGAAATGCATGCTTTGCAGCGACAATATAGAATCTCTCGAAGATATTTTCGGACATCTGACGGATAAgcataataagaagtttcatactgatattaaaaatcaaatatTCCCTTTAAAGTTTAAAACGAAGCAACTGAAATGCTACCAATGTGCCCATGGCGTTGTTTTCGCCACATTAAAAGCATTACAAGAGCATATGCACAGACACTACCGTAACTTCGTTTGTAACGAATGTGATGCTGGCTTCATCAATAAAATGTCATTAAATATCCACAGCCGCGTTCACGCGAAAAGGACTTTTCCCTGCCGACATTGTCCAGTTGTATTCGAAACCGAAAGGAAGAGAAGCAATCACGAGCTACTTATCCACAATGGGACTGGCAATTCAAGCAGGTGCCATTTATGTAATAAAGGTTTTAGGGAAAATATTGACAAGAAAATACATCTGTCTACGGTTCATGGCGTTACCACGGCGAAATATGACTGCACTGCGTGTGACAAGAGCTTTTTTAGCAATAGTATTCTTAGTGCCCATATCAGGCGTGTCCATCTGCTGGAGAAAAAGCATAAATGTTCTGAGTGCGACAAAGCGTTCTTCGACAGTTCTGGTCTGAAGGATCATATGTTGTCTCATACAGGGGCGAAAGATTTCAAATGTGATGTCTGTTCGAAGTGGCTGCAAAAAAAGTCTCTGACTGAGCATATGAGGATTCATAACAATGACAGGcgttttaaatATAAACACCAAAAAGTGGCTCCAGCTACGGAAATCAAAGTAGAGCTGAAGGCTGAAGAAACTGTTTCACCTAAGCATGAACTAATAGAAATTGAAGTACCTAAGACAGAGATAATACCAATGGAACCACAGACGCCGGCGCCGGCAGCGCCTCGACCACGCATAAAGCGACTACTACATAAACATCTACACAATTTGAAATTAATCCTAGAATCTACTAATGCTACAACGATACTTAAGCATGGAGACAAGGGTTATTTGTGCTGCTATTGCCCGAAAGGTTTCGAAGAACCCAAGGATTTAAAAGTACACACTTTAACGGAACATCAAAATGAAGAGAAATTCTACGGCAACATTTCAGCCAATGGACCATCTACTTTCTTAGTCAAACTTGACATCACAAACCTGAAATGCATGCTTTGCAGCGTCAATATAGAATCTCTCGATGATATTTTCGGACATCTGAcagataaacataataaaaagttTCATACTGATATTAAAAACCAAATATTCCCTTTCAAGTTTAATACAAAGCAACTGAAATGCTACCAATGTACTAACGACGTTGTTTTCGCTACATTCAAAGCATTACAAGAGCATATGAACAGACACTACCGATACTTCGTTTGTAACGAATGTGATGCTGGCTTCATCAATAAAATGTCATTAAATACCCATAGCCACGTTCACTCGAAAAGGACTTTTCCCTGTCGACATTGTCCTGTTGTATTCGAAACCGAAAGGAAGAGAAGCAATCACGAGCTACATATCCACAATAGGACTGGCTATTCAAGCAGGTGCCATATATGTAATGAAGGTTTTAGGGAAAGTATTGATAAGAAAATACATCTGTCTACGGTTCATGGCGTTAATACAGCGAAATATGACTGCACTGCGTGTGACAAGAGCTTTTTTAGCAATAGTATTCTTAGGGCGCATGTCAGACGTGTCCATCTGATGGAGAGAAAGCACAAATGTTCAGAGTGCGACAAAGCGTTCTTCGACAGTTCTGGTCTGAAGGATCATATGTTGAGTCATACAGGGGCGAAAGATTTCAAGTGTGAAGTATGTTCGAAATGGCTGCAAAAAAAATCTCTGACTGAGCATATGAGGATTCATAACAATGACAGGccttttaaatgtaaaatatgtGATAAGTCGTTTGTACAAAAACCTAGCTTGAATTGGCATATGAAGGCAAAGCACGCTAATAATTATACTATGTAA
- Protein Sequence
- MTPGRRRVDIHHKVATATKLKTEPKAAEAGSPKIKQKETAVPNEKNTKLKPQTAPRLRVKQLLHKHLHNLKVILESTNATMILKHGDKGYLCCYCPKGFEKPMNLKEHTLTEHQNEEKFYGNVKAQGSSTFLVKLDITNLKCILCSVNIESLEDMFVHLKEKHTKNFHTDINNQILPFKFNATQLKCYQCPYDVVFATFRALQEHMNRHYRYFVCNECDAGFINKLALFRHIPTHAKGTFPCRHCPVVFETARKRSNHELRYHSRTGYPNRCNLCNEDKQQKVTPATEIKVQLKAEETVSPKHVLKEIAVPKKGIIVIEPQTTAAAASQKPRPRVKRLLHKHLHNLKLILESTNATMILKHGDKGYLCCYCPKGFEDPKDLKVHTLTEHQNEEKLYGNISTKGPSSFLVKLDITNLKCMLCSDNIESLEDIFGHLTDKHNKKFHTDIKNQIFPLKFKTKQLKCYQCAHGVVFATLKALQEHMHRHYRNFVCNECDAGFINKMSLNIHSRVHAKRTFPCRHCPVVFETERKRSNHELLIHNGTGNSSRCHLCNKGFRENIDKKIHLSTVHGVTTAKYDCTACDKSFFSNSILSAHIRRVHLLEKKHKCSECDKAFFDSSGLKDHMLSHTGAKDFKCDVCSKWLQKKSLTEHMRIHNNDRRFKYKHQKVAPATEIKVELKAEETVSPKHELIEIEVPKTEIIPMEPQTPAPAAPRPRIKRLLHKHLHNLKLILESTNATTILKHGDKGYLCCYCPKGFEEPKDLKVHTLTEHQNEEKFYGNISANGPSTFLVKLDITNLKCMLCSVNIESLDDIFGHLTDKHNKKFHTDIKNQIFPFKFNTKQLKCYQCTNDVVFATFKALQEHMNRHYRYFVCNECDAGFINKMSLNTHSHVHSKRTFPCRHCPVVFETERKRSNHELHIHNRTGYSSRCHICNEGFRESIDKKIHLSTVHGVNTAKYDCTACDKSFFSNSILRAHVRRVHLMERKHKCSECDKAFFDSSGLKDHMLSHTGAKDFKCEVCSKWLQKKSLTEHMRIHNNDRPFKCKICDKSFVQKPSLNWHMKAKHANNYTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -