Basic Information

Insect: Orthosia gothica
Gene Symbol: -
Assembly: GCA_949775005.1
Location: OX459035.1:4094440-4101405[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.068 13 8.5 1.2 5 21 209 225 206 226 0.93

2 13 0.00028 0.056 15.9 0.3 2 23 250 271 249 271 0.97

3 13 0.027 5.4 9.7 2.6 1 23 284 306 284 306 0.97

4 13 0.00013 0.026 17.0 2.6 1 23 317 339 317 339 0.99

5 13 8.1e-05 0.016 17.6 2.0 1 23 347 370 347 370 0.96

6 13 0.058 12 8.7 0.0 2 23 377 398 376 398 0.95

7 13 0.024 4.7 9.9 6.0 1 23 404 426 404 426 0.98

8 13 3.7e-07 7.3e-05 25.0 1.2 1 23 432 454 432 454 0.96

9 13 6.8e-06 0.0014 21.0 0.9 1 23 460 482 460 482 0.99

10 13 1.2e-06 0.00024 23.4 0.2 1 23 488 510 488 510 0.98

11 13 2.6e-05 0.0051 19.2 0.4 1 23 516 538 516 538 0.99

12 13 4.7e-05 0.0094 18.4 2.2 1 21 544 564 544 566 0.96

13 13 1.7e-06 0.00033 22.9 0.6 1 23 572 594 572 594 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.068	13	8.5	1.2	5	21	209	225	206	226	0.93
2	13	0.00028	0.056	15.9	0.3	2	23	250	271	249	271	0.97
3	13	0.027	5.4	9.7	2.6	1	23	284	306	284	306	0.97
4	13	0.00013	0.026	17.0	2.6	1	23	317	339	317	339	0.99
5	13	8.1e-05	0.016	17.6	2.0	1	23	347	370	347	370	0.96
6	13	0.058	12	8.7	0.0	2	23	377	398	376	398	0.95
7	13	0.024	4.7	9.9	6.0	1	23	404	426	404	426	0.98
8	13	3.7e-07	7.3e-05	25.0	1.2	1	23	432	454	432	454	0.96
9	13	6.8e-06	0.0014	21.0	0.9	1	23	460	482	460	482	0.99
10	13	1.2e-06	0.00024	23.4	0.2	1	23	488	510	488	510	0.98
11	13	2.6e-05	0.0051	19.2	0.4	1	23	516	538	516	538	0.99
12	13	4.7e-05	0.0094	18.4	2.2	1	21	544	564	544	566	0.96
13	13	1.7e-06	0.00033	22.9	0.6	1	23	572	594	572	594	0.98

Sequence Information

Coding Sequence: atggaaCTAAGTGTTCAGTCATTCGAAAGAATTTGCCGCGTGTGTCTAATAGAATGTGTCGGCATGAAGTCCTTATTTACGAAGGTGAACGACGAAAACCGAAACTTGTTGGATATCCTTGCATTTACTGCTGATATTAATGTTAAATTAGAGGATTGTCTGCCAAAACAGGTTTGTGGTGAATGTGAGTCGGTCATGTGCAAGGCTGATGCATTCAAACGCCGTTGCATTAACTCCGAGATGATTTTAAACGGCATCTACCAGAATTCTTTAAGCCTAGGTGAAACATCGAATATTGGTAAAACATGCTCAATTAAAGATGAAAATGGGGATATGACTAAGAATTTAAGTAACTATATTACTTTTGAGACTTCAAATTACAGTTCCCAAGACGATATTGATAAGAAAAATCTTTTAATAGGAGATACTACAATATACCCAATCGCGATAATCTCAAAAGTACCTGAAAACGCCGAACAATCAATCAAAGAAGAGATAAACTTAGATTTTGATGATGATATAAGTTTCGCCGATCAGTATGATGATGGAATCCAGGGTGACACAATACCTGTTGAATTTAAGGAGGAAAAGCCTTTAAAAATTGATGGAAAAGAGCACCTTTGTTACTGTGGCCTAGCATTTAATACAAAGTACAAGTACAAAAGCCATTTGAAACAGCGAAACtgtgataagtacaaaaaagcatttgacaaaattcacaacaataaaatagtTGACAATGAGATACAATGTGTTGAATGTAGCCAAAAGTTCAAAACCCCAAATGAGTGGAAAATTCATCAAAAAGTCCATCGGAAGGAACATTTATCGGAAAACAAATCATTATTACACAGCTGCAAATTCTGTTTATCCCAGTTCAAAACGGAAGCAGCATTAAAAACTCACATATTAAAGCACGAAAAAACCGTAAACAGCAAACCTGAATTCTACCAATGCTCATTCTGTTTACGTAAATTCAAGAGCCAAAAGTCATTAGGAGCTCACTTAAGACGTCACGAACAAAAAGACAGCATAAGACACATTTGCAAAGTATGTAAAAGAGATTTTAAATACAAAGCTTACCTAGAAAATCATATCTTGACGATGCACTCAAGAAAAAACGGTATAAGTTGTGAGGTATGTGCACAAAGTTTTCCTGACGATGAGAGTTTGGAGTTACATAAAGATAGTCATAAGAATGAAAAAAAGCATCGCTGCACCACTTGTAACAAAGCGTTCCTTATGTTATGTACGCTCAAGGAGCATATGCGGACTCACACCGGTGAGAAGCCATTCCTTTGCTCGCAGTGTGGCCGAGGGTTTAGTCAGAAGACGAATTTAGCACAGCATATGAGAAGACATCAGGGGCTGAAGCCTTTTAAATGTGAAAACTGCGAAAAGAGATTCGTATCAAAGGGCGAACTAGACGCTCACACCCGCAAACATAGTGGAGCGCATCCCTTCGTTTGTGACGATTGTGGAAACGGCTTCACAACATCCAGCGCTCTGGTCAAGCATCGTCGTATTCACACTGGCGAAAAACCTTACCAATGTGACTTATGCCCTATGAGATTCGCTGCTTCTGGTACCTTGAAGAATCACCGCAGAACACATACCGGGGAACGGCCTTTCCAATGTTCTTATTGCGAAAAGGCATTCGTCCAACGCAACGATCTAATCTCTCATATACGGTGTCATACCGGAGAAAAGCCGTACATTTGCACACAGTGTGGTCAGTCGTTTAGGAAAGCGTCGGGATTGAAAAATCATGTTAAAATGCATGGTAAAGAAACGGGGAATTTGATGCAAGGTGTCGGTGTGATGTTGAGTGGGATGCAATGTACTGAACAgtga
Protein Sequence: MELSVQSFERICRVCLIECVGMKSLFTKVNDENRNLLDILAFTADINVKLEDCLPKQVCGECESVMCKADAFKRRCINSEMILNGIYQNSLSLGETSNIGKTCSIKDENGDMTKNLSNYITFETSNYSSQDDIDKKNLLIGDTTIYPIAIISKVPENAEQSIKEEINLDFDDDISFADQYDDGIQGDTIPVEFKEEKPLKIDGKEHLCYCGLAFNTKYKYKSHLKQRNCDKYKKAFDKIHNNKIVDNEIQCVECSQKFKTPNEWKIHQKVHRKEHLSENKSLLHSCKFCLSQFKTEAALKTHILKHEKTVNSKPEFYQCSFCLRKFKSQKSLGAHLRRHEQKDSIRHICKVCKRDFKYKAYLENHILTMHSRKNGISCEVCAQSFPDDESLELHKDSHKNEKKHRCTTCNKAFLMLCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCENCEKRFVSKGELDAHTRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYQCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYICTQCGQSFRKASGLKNHVKMHGKETGNLMQGVGVMLSGMQCTEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01119596; iTF_00111882;
90% Identity: iTF_00111882; iTF_01119596;
80% Identity: -