Ogot055079.2
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459058.1:4503108-4524658[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5 9.9e+02 2.6 0.7 2 23 269 290 268 290 0.84 2 19 0.0018 0.35 13.4 0.6 1 22 295 316 295 319 0.92 3 19 0.0068 1.4 11.6 2.8 2 23 451 473 450 473 0.93 4 19 0.0099 2 11.1 0.0 1 23 479 501 479 501 0.94 5 19 0.034 6.8 9.4 0.1 1 23 513 536 513 536 0.89 6 19 3.5e-07 7e-05 25.1 3.5 1 23 541 563 541 563 0.98 7 19 0.00019 0.038 16.5 0.9 1 23 569 591 569 591 0.95 8 19 0.00018 0.035 16.6 4.9 1 23 597 619 597 619 0.98 9 19 1.7e-07 3.3e-05 26.1 0.4 1 23 625 647 625 647 0.98 10 19 0.0047 0.94 12.1 4.1 1 23 653 675 653 675 0.98 11 19 0.00044 0.087 15.3 0.1 1 22 681 702 681 702 0.95 12 19 9.9e-05 0.02 17.4 0.8 1 23 709 731 709 731 0.98 13 19 6.6e-05 0.013 17.9 4.2 1 21 737 757 737 758 0.95 14 19 6.6e-05 0.013 17.9 4.2 1 21 774 794 774 795 0.95 15 19 6.6e-05 0.013 17.9 4.2 1 21 811 831 811 832 0.95 16 19 6.6e-05 0.013 17.9 4.2 1 21 848 868 848 869 0.95 17 19 6.6e-05 0.013 17.9 4.2 1 21 885 905 885 906 0.95 18 19 6.6e-05 0.013 17.9 4.2 1 21 922 942 922 943 0.95 19 19 8.9e-06 0.0018 20.7 3.6 1 23 959 982 959 982 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTAGTTCTTTACAATTCTAATGTTTGTCGATTATGTGGGGAAGAAAATGATAATGGAAATTTGTTATATTCGTGTGAAGAAAATAGTCAAAACTTAAGTGAAGTAATTAACACATATTTGCCAATCAAGGTTGCTGATGATGGCCAACTGCCTCGTACCATTTGTCCAGGATGCACTATACAGCTGGAAGCCACCGTAGAATTTCTAACACTTATTATAAACGGACAAAAAGTAATTCGTGAACTTCATCTCAGAGAAAAAGAATACAAGAGAACTGTTCTAAATCCCCCTACAGAACAGGAAGTTGTAACGGAAAAAATCATTTATGAAGTTAATGCAAATGATGGAATGTACCAAGTGGAACACCCAATTTCCTTGCAAGTTGCTGGTCTCGAAAAGCCAAAACGCAAGCGAGGCAGACCTcctaaaaaaccaaaaactccTGAGGAGTTAGCCAAGGAAGCCGCTGCAAAAGAGCAGGAGATAAAACGCGTTAAAAAGCAAGAAAGAGAATATGACCCAGGGTCAGGGACAGGGAAGCGGAGGAGGAAAACTCCAACTCGGTTCCGAGAAGCTGTTCAGGGTAAAGAGCTTGAGAGGATATTCAAAGAAGAAGGAGTAATAGATGGCGAGGAAAGTGAAGCTGATATTAAGATAGAACTGCACCAAGACTTTAAGCCAACTGTGCCTAAGGAACCGGAAGTTATTGGTCATCTAGAGAATTCTGGAGAACTTGTCGTTGTAGTCAAGGGCAAGGGCCGTGGTAGGCCTAAAGGTCCAATGACTCAAACCCGCAAAGAATGCGCGATCTGCGGCATGGAGTTCACCTGCAATGGCCGATACATGTCACATGTGGCCCAGCATGGTCCAGTCCTGTACCAGTGTGGGCAGTGCTCTGAGACCTTCACTACTCTGTTGGACTTCAACAACCATCAGAAGGAACTCGTACACACCGGACAGAATATTATACCTTGCAAGAAGAATGTTGAGAGAATTAGGGCTAAGAAAGGTGATAAACCAAGAACTGAAACAATAGTGATACCTGATGACCCTCAACCACAAACAAAGAAGTCTGACACTGTACAAATATTAGAGAATGTGATATTACCTATACCTTTGACAAACTCCTTGCCGGACTTAAATCCTCAGCCAATAGTAATAATTGACGATGGTGTGAATGGGTCCGAGTTTCTGAAAACACAGAGCCCTACTGTTGAAATTACATCTAGTCCTAGTGTTGATGGTGTTGTTAAAACTGTTGATACGACCGCCGATGCTACTGTGACTGAAAAGTCGGATGATGTAGAACAAGTAGAACTGACTCCGTCTGGTAAACAAAGACTGAAGTGTAACCACTGCGACAAGACCTTCGGTAGTAAGCAGAGCAAGTCCTTACATATCAAGGCCAGCCACCAGGGCGAGCGGCCGtacgcgtgcggcgagtgcggcgcgcGCTTCGCCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGcaccgccgccgcgccgccggCAGCACGCCCAAGGGGTATGCCTGTGATCTGTGTGGGAAGGTCCTAAACCACCCTTCGTCCGTGGTGTACCACAAAGAAGCCGAGCACGCGGGTCAGCGATACGTGTGCAACAAATGCGGCAAGTCATTCAAGCACAAGCAGTTGCTGCAACGGCACCAGCTGGTGCACTCCCAGGACAGGCCTTATAACTGTAAGTTGTGCAATGCTTCGTTCAAGACGAAGGCGAACTTACTGAACCACTCGCTGCTGCACACCGGCGTCAAGAAGTTCTCGTGTGACATATGCAAGCACAAGTTCGCGCACAAGACTAGTCTCACGCTTCATATGAGGTGGCATACTGGTCAGAAACCCTACTCGTGCAATGTTTGCGGCAAGAGTTTCAGTCAGAAAGGCAACTTATCCGAGCATGAACGTATCCACACCGGAGAGAAGCCCTTCCAGTGTTCCCTGTGTCCTCGCAAGTTTACCACGTCCAGCCAGCACCGACTGCACGCGAGGAGACACAACTCTGACAAACCGTTTATTTGCGCGCATTGTGGGAAAAGGTTCGTGTCCCGCGGCTCCTGGGCGGCGCACGTGCGGCGCGAGGGCGGCGGCCGCACGCACCGCTGCGGCGAGTGCGGCCGCACGTTCGCGGAGCGCTGGCCGCTACTGAAGCACCTGCGCAAGCACTCGGGCGAGCGGCCCTTCCGCTGTCCTCACTGTCCCAGGGCCTTCGCCGACTGTTCCAACCTCAACAAGCACAAGAAGCACACGCCGCTACTGAAGCACCTGCGCAAGCACTCGGGCGAGCGGCCCTTCCGCTGTCCTCACTGTCCCAGGGCCTTCGCCGACTGTTCCAACCTCAACAAGCACAAGAAGCACACGCCGCTACTGAAGCACCTGCGCAAGCACTCGGGCGAGCGGCCCTTCCGCTGTCCTCACTGTCCCAGGGCCTTCGCCGACTGTTCCAACCTCAACAAGCACAAGAAGCACACGCCGCTACTGAAGCACCTGCGCAAGCACTCGGGCGAGCGGCCCTTCCGCTGTCCGCACTGTCCCAGGGCCTTCGCCGACTGTTCCAACCTCAACAAGCACAAGAAGCACACGCCGCTACTGAAGCACCTGCGCAAGCACTCGGGCGAGCGGCCCTTCCGCTGTCCGCACTGTCCCAGGGCCTTCGCCGACTGTTCCAACCTCAACAAGCACAAGAAGCACACGCCGCTACTGAAGCACCTGCGCAAGCACTCGGGCGAGCGGCCCTTCCGCTGTCCGCACTGTCCCAGGGCCTTCGCCGACTGTTCCAACCTCAACAAGCACAAGAAGCACACGCCGCTACTGAAGCACCTGCGCAAGCACTCGGGCGAGCGGCCCTTCCGCTGTCCGCACTGTCCCAGGGCCTTCGCCGACTGTTCCAACCTCAACAAGCACAAGAAGCAAGTCCACAAACAGATCAGCTTACTGGCGAACTCGAACCAACAACCGATTCCTACCCCCATACCTCTGAAGATAGAACAGCCAGAGTCCCCGCTCATACAGTTAGAGGAACAGACCGTTGCCATCCCGGAGACTTCACCAGTCAAGCTGTTAGAGGAAGCTACGGAAGACGAGTTGGAGGAGAGAGTCATCTATGTGACGTATGATGTGGATGATGCTGAGTCGCCTGCTTTCCACATACTGGATCCTGAACAGGCAGCCACACTAGAAGGCGACAAGGTGCTAACAACATGCGAGCTGTACTCTGGCGGCCCGTCACTACTAGTGCCACAGCCCGAGTACGAGCAACTCGAGCTAGAACACGAGCAGCTAGAACTGCAGCACGAGCAGCTAGAACTGCAACACGAGCAGCTAGAACTGCAGCACGAGCAGCTCGAGCAGGTGGAACTGCAGCAGCTACCTGAGGAGATGGTGCTGGAGGAACAAAACCAGAATATGACTGTAACGGATGAGCAGGGCAATCCGCTACACTTCACCATGCAGGATGGCACACGGCTCGCCATCACGTCCGCTGATGGAAAGTCTTTACAAGTGATAACTCATGACGGACAAACAATTCCTGTTGAGATTAACGGATATGCAGATGAGGagGAGGTAGACAATCCCGACACAATAGTTCACCAGCTGAACCTACAGAAGAGCATCGAGTCCAACGTGTCTTCGCCCGTCACCCATTACTTTACTAttgtttaa
- Protein Sequence
- MEVVLYNSNVCRLCGEENDNGNLLYSCEENSQNLSEVINTYLPIKVADDGQLPRTICPGCTIQLEATVEFLTLIINGQKVIRELHLREKEYKRTVLNPPTEQEVVTEKIIYEVNANDGMYQVEHPISLQVAGLEKPKRKRGRPPKKPKTPEELAKEAAAKEQEIKRVKKQEREYDPGSGTGKRRRKTPTRFREAVQGKELERIFKEEGVIDGEESEADIKIELHQDFKPTVPKEPEVIGHLENSGELVVVVKGKGRGRPKGPMTQTRKECAICGMEFTCNGRYMSHVAQHGPVLYQCGQCSETFTTLLDFNNHQKELVHTGQNIIPCKKNVERIRAKKGDKPRTETIVIPDDPQPQTKKSDTVQILENVILPIPLTNSLPDLNPQPIVIIDDGVNGSEFLKTQSPTVEITSSPSVDGVVKTVDTTADATVTEKSDDVEQVELTPSGKQRLKCNHCDKTFGSKQSKSLHIKASHQGERPYACGECGARFAYPRSLALHAVSHRRRAAGSTPKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQDRPYNCKLCNASFKTKANLLNHSLLHTGVKKFSCDICKHKFAHKTSLTLHMRWHTGQKPYSCNVCGKSFSQKGNLSEHERIHTGEKPFQCSLCPRKFTTSSQHRLHARRHNSDKPFICAHCGKRFVSRGSWAAHVRREGGGRTHRCGECGRTFAERWPLLKHLRKHSGERPFRCPHCPRAFADCSNLNKHKKHTPLLKHLRKHSGERPFRCPHCPRAFADCSNLNKHKKHTPLLKHLRKHSGERPFRCPHCPRAFADCSNLNKHKKHTPLLKHLRKHSGERPFRCPHCPRAFADCSNLNKHKKHTPLLKHLRKHSGERPFRCPHCPRAFADCSNLNKHKKHTPLLKHLRKHSGERPFRCPHCPRAFADCSNLNKHKKHTPLLKHLRKHSGERPFRCPHCPRAFADCSNLNKHKKQVHKQISLLANSNQQPIPTPIPLKIEQPESPLIQLEEQTVAIPETSPVKLLEEATEDELEERVIYVTYDVDDAESPAFHILDPEQAATLEGDKVLTTCELYSGGPSLLVPQPEYEQLELEHEQLELQHEQLELQHEQLELQHEQLEQVELQQLPEEMVLEEQNQNMTVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITHDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKSIESNVSSPVTHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00111876;
- 90% Identity
- iTF_00111876;
- 80% Identity
- -