Ogot043205.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459050.1:2148708-2170731[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0021 0.42 13.2 0.0 3 23 1037 1058 1035 1058 0.90 2 21 0.00067 0.13 14.8 0.1 1 23 1073 1095 1073 1095 0.97 3 21 0.00067 0.13 14.8 0.1 1 23 1115 1137 1115 1137 0.97 4 21 0.00067 0.13 14.8 0.1 1 23 1157 1179 1157 1179 0.97 5 21 0.00067 0.13 14.8 0.1 1 23 1199 1221 1199 1221 0.97 6 21 0.00067 0.13 14.8 0.1 1 23 1241 1263 1241 1263 0.97 7 21 0.00067 0.13 14.8 0.1 1 23 1283 1305 1283 1305 0.97 8 21 0.00067 0.13 14.8 0.1 1 23 1325 1347 1325 1347 0.97 9 21 0.00067 0.13 14.8 0.1 1 23 1367 1389 1367 1389 0.97 10 21 0.00067 0.13 14.8 0.1 1 23 1409 1431 1409 1431 0.97 11 21 0.00067 0.13 14.8 0.1 1 23 1451 1473 1451 1473 0.97 12 21 0.00067 0.13 14.8 0.1 1 23 1493 1515 1493 1515 0.97 13 21 0.00067 0.13 14.8 0.1 1 23 1535 1557 1535 1557 0.97 14 21 0.00067 0.13 14.8 0.1 1 23 1577 1599 1577 1599 0.97 15 21 0.00067 0.13 14.8 0.1 1 23 1619 1641 1619 1641 0.97 16 21 0.00067 0.13 14.8 0.1 1 23 1661 1683 1661 1683 0.97 17 21 4.9e-05 0.0097 18.3 0.2 1 23 1715 1737 1715 1737 0.98 18 21 0.0022 0.43 13.2 0.2 1 23 1743 1765 1743 1765 0.97 19 21 0.0012 0.24 13.9 0.3 1 23 1771 1793 1771 1794 0.95 20 21 0.063 13 8.5 1.7 1 23 1807 1829 1807 1829 0.96 21 21 0.1 20 7.9 0.0 1 20 1984 2003 1984 2006 0.93
Sequence Information
- Coding Sequence
- ATGGGCAAATCAGATAGAATAGCAGTGCTAAACATAAAAATCCCAGGTTTCAATGCCCCATGGTcgatcatacaaatatatgcTCCAACTGAACAGGCCTCAGAAGAGGAAAAGGAAGAATTCTACTCCCTTCTATCTGCCACTATGGACAATACCTATAAGTATAAGATAGTGATGGGAGATTTCAACAGCCAAATAGGATCGCGTCAAATGGGTGAAGAACGTATGATGGGGCCATACACCAAAGGAAAGAGAAACTACAATGGCCAATGTCTTATAGACTTTGCACAATTATACAACCTACGAATAATGAACACTCTATTTAGGAAAAAATCATCTAGGAAATGGACTTGGATCTCACCAGACGGGAAATACAGAAATGAAATAGATTTTATATTATCTAACATTCCCTCCCACTTTAAGGATGTAGAAGTTATAAATGAGTTAAACTTCAGCACAAACCACAGAATGGTAAGAGGAACTATCACaactcataataaaaaaaccaggcATGTCAAGAAAAATGAACCTATACATTTAATTCCGCCACTTTCAGAAGAGTCACTACGTAGATTGAGCAATAAACTCCCAAAAATGGAAAAGCTTCAGTCAACCCAACAGAAATACGATGAACTAGAAAACTAtctaaaggaaataaataaagaagttgGCCTAAAAGGAATAAAGAAAGATAAAATAGGTGATGATGCTAGAAAATTAATTGACGAGaggaaaaatctactaaatgaTAGAATAAAGAACAGAAAACATATAGAAGAAATAAGTAAGAAAATCAATGAGAGTATCAGGAAACATAAAAAACTAAAGCGTATGAACATAATAAAGAATGAAATAGAAAGAACAGGTGGGATCAAAAAAGCACTGAAACAACTCAAGGACCACTCCACTTGGATGccggaaataaaaacaaaaaccagacAAGGAAACGACAAAACCACGTCACAGAGGATAGAACTAAGAAGAGAGGCAACAAGATTCTATAGAATATTATATAGCAATCTAAGAAACCCAACTGAGCCACCATTCCTCGACCGTTCAGTAGCTGGTAGTGTTCCAGAAATAATACAAAGTGAAGTAAGGAAGGCAATAAACACACAGAAAAGCTATAAAGCACCAGGAGACGACAAAATAACCAACGAACTACTAAAAGAGCTAGTCGATGTTATCCTGCAGACACTTACACAATTGTTCAACGAAATACTTAACAACGAATACATACCAATTCAGTGGACTAAATCTACTATAGTTCTCATACACAAAAAAGGAGACAAGAACAGAATAGATAACTATCGACCAATAAGTATGATGTCCAACCTCTATAAGATTTTCGCCAAGATAGTACTGGGAAGGATCACGAAACCCCTGGACGAACAGCAACCAATAGAGCAAGCCGGTTTTAGAAGCGATTTCTCTACAGTCGATCACATACATGTCGTGAAACAGGTCATCGAAAAGTATAACGAATACGGAAAGTCCTACTATATCTTGTTCGTAGACTACAACAAAGCCTTCGACTCCCTATATCACTGCTCCATATACAATGCACTCGGGAAACAAGGAGTTCACGCCAAGTATATAAACATCATCAGgcaaatatacaaaagaagcaCGGCCCGAATACAGCTTGAAACCGTAGGAgacgaatttaaaattgaaaagggagtGCGACAGGGTGACCCGCTATCGCCCAAACTATTTGCTGCAGtcttggaggacgtcttcaggGAACTAAAATGGGATAACATCGGATTAAACATTAACGGCAAAATGCTAAACCATCTgagatttgctgatgacattgtAATATTTGCAGAAGAACCACAAATATTACAAGTAATGCTAAAACAACTATCCGATGCTAGTGCCAAGGTGGGTCTCACTATCAACTTCtctaaaacaaaagtaattacCAACAGCACCCGAGAAACAATAGCAACAGAAGAACAAGAGGTCGAATATGTAGAAGAGTACATATACCTGGGACACCTCATATCTCCTCAACATCTAATGCctaaagaaatacaaagaagGGTAAACAACACCTGGTCCCGCTACTGGTCCCTCAAAGAAGTCGTGAAGAGCAAGTCCATACCAATTCGTGAAAAGAAAAAGGTTTATGACAGTTGCATTCTGCCAGTACTCACATATGGATGCCAAACATGGTCCTTAACGAAATCaagcatacaaaaattaaaagtctGCCAACAAGGTATGGAGAGGAGCATGCTTGGAATCCGCATCAAAGACAAATGTCGACTTGTAGACATACGAAAGCAAACGGGGGTGGCGGACGTAACAAATAGAGTCAAGAGACTGAAGTGGAGATGGACGGGCCACACAATGCGAAATAGAACAGAAAAGTGGACGAGAAGCGTAATTGAGTGGTACCCACGCGACGGGAAAAGGCCGGCAACAAAAGAGGTGCACGGCGGCGACTCTCCGGTAGAGTGTGGCTCGTGCGGCGAGCTGTGCTGGTCGCGTGAGGCGCTGGCGGCGCACATGGCGCAGCGCCACCCGCACCTGCCGCCGCGCGACCAGGCGCCCGACCCGCCCTACGAGGACTCCGACTCGGGTATGTACACTCACAATAACTGTGCTGGTCGCGTGAGGCGCTGGCGGCGCACATGGCGCAGCGCCACCCGCACCTGCCGCCGCGCGACCAGGCGCCCGACCCGCCCTACGAGGACTCCGACTCGGGCGCTGGCGGCGCACATGGCGCAGCGCCACCCGCACCTGCCGCCGCGCGACCAGGCGCCCGACCCGCCCTACGAGGACTCCGACTCGGGTATGTACACTCACAATAACTGTGCTGGTCGCGTGAGGCGCTGGCGGCGCACATGGCGCAGCGCCACCCGCACCTGCCGCCGCGCGACCAGGCGCCCGACCCGCCCTACGAGGACTCCGACTCGGGCGCTGGCGGCGCACATGGCGCAGCGCCACCCGCACCTGCCGCCGCGCGACCAGGCGCCCGACCCGCCCTACGAGGACTCCGACTCGGGTGACGACATGGAGTTCCGCCTTTCTCCCCTGTCGCACGGCGTTACCGAGCGCGCGGTGTACGACACCATGCGCGGGCCCGAGCTGTTCTGTCAGGACTGCGGCGTGGCCTTCCAGCGAGCTGACCTGCTGAGGAGACACGTGGCTGCAGCGCACAGTTACAAGCGGCACGACAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGCTCAAGCAGCACCTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCAGAGACGCACGCCGAGCGGCACCGCGCGCCGCACTCACAGCCCAGGTTAAAAAGAATGGGTCGAGGTCGAAACAATACGTCATCATCAAATAATTCACGGCAATTCCCTTGTAGGGTATGTGGCAAGGTGTTTGGTTCCCGAAGTTCGCAACAGATCCACATCCGCATCCACACGGGCGAGCGGCCGTACGCGTGCCGCTTCTGTTGGAAAGCGTTCGCGGACGGCGGCACGCTGCGGAAGCATGAGAGAATACATACGGGCGAGAAGCCGTACGCATGCGCGGTGTGTCCACGCGCATTCAACCAGCGTGTCGTGCTGCGCGAACACGTGCGCTCGCATCACTCCGCCCCCGATCGACGCGCCAACGgtgGTCCCGCATACTGCTGTGTAGTATGTGGGCGCACGCTCCACTCGAGTAACGAACTGGTGCAGCATCTCATACAGCACTGCGATGCCAACACGGCGCTCAAGAGACAACCCCAGACGGGGCCACGAAAGTACAAGAGACGacgaaaactgaagaccgaGTCCCCGGCGACACCTCACGACTGGGAGCGCACCTCCCCCTCCCCGCCGCCCGTGTCGCGCTCACCCTCTCCCTCCCCCTCCCCCGCCGACACGCCGCAGCTGTCGCCCGCCTCGCCGCCCTCCCCGCCGTCGCCCGCATCCCCCGCCTCCCCCGTGCGCCGGCGCCGGCGCCGCGCCTCGCCCGCGCCGCGTCCGCGCATGATACACACGGAGGAGCGGCCGCCCGCGCGCCGCCGCCGGGCGCCCCCCCGCGCGGCCTCCCCGCCCTCCCCGGCCTCCCCGGCGCGCGCGCGGGCCGCCCGGCGCCGGCCGCCGCGCCACCCCGCAGACGACCTGCGCGCCATAGGGCCGCGCGAGCCGGCGCCGGACGCCAGCGGCCCCTACAAGTGCGAGATGTGCGCGCTGGAGTTCCCGCGGCGCGACGCGCTGCTGCTGCACGTGCCGGTGCACATCTGA
- Protein Sequence
- MGKSDRIAVLNIKIPGFNAPWSIIQIYAPTEQASEEEKEEFYSLLSATMDNTYKYKIVMGDFNSQIGSRQMGEERMMGPYTKGKRNYNGQCLIDFAQLYNLRIMNTLFRKKSSRKWTWISPDGKYRNEIDFILSNIPSHFKDVEVINELNFSTNHRMVRGTITTHNKKTRHVKKNEPIHLIPPLSEESLRRLSNKLPKMEKLQSTQQKYDELENYLKEINKEVGLKGIKKDKIGDDARKLIDERKNLLNDRIKNRKHIEEISKKINESIRKHKKLKRMNIIKNEIERTGGIKKALKQLKDHSTWMPEIKTKTRQGNDKTTSQRIELRREATRFYRILYSNLRNPTEPPFLDRSVAGSVPEIIQSEVRKAINTQKSYKAPGDDKITNELLKELVDVILQTLTQLFNEILNNEYIPIQWTKSTIVLIHKKGDKNRIDNYRPISMMSNLYKIFAKIVLGRITKPLDEQQPIEQAGFRSDFSTVDHIHVVKQVIEKYNEYGKSYYILFVDYNKAFDSLYHCSIYNALGKQGVHAKYINIIRQIYKRSTARIQLETVGDEFKIEKGVRQGDPLSPKLFAAVLEDVFRELKWDNIGLNINGKMLNHLRFADDIVIFAEEPQILQVMLKQLSDASAKVGLTINFSKTKVITNSTRETIATEEQEVEYVEEYIYLGHLISPQHLMPKEIQRRVNNTWSRYWSLKEVVKSKSIPIREKKKVYDSCILPVLTYGCQTWSLTKSSIQKLKVCQQGMERSMLGIRIKDKCRLVDIRKQTGVADVTNRVKRLKWRWTGHTMRNRTEKWTRSVIEWYPRDGKRPATKEVHGGDSPVECGSCGELCWSREALAAHMAQRHPHLPPRDQAPDPPYEDSDSGMYTHNNCAGRVRRWRRTWRSATRTCRRATRRPTRPTRTPTRALAAHMAQRHPHLPPRDQAPDPPYEDSDSGMYTHNNCAGRVRRWRRTWRSATRTCRRATRRPTRPTRTPTRALAAHMAQRHPHLPPRDQAPDPPYEDSDSGDDMEFRLSPLSHGVTERAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHSQPRLKRMGRGRNNTSSSNNSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSNELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKTESPATPHDWERTSPSPPPVSRSPSPSPSPADTPQLSPASPPSPPSPASPASPVRRRRRRASPAPRPRMIHTEERPPARRRRAPPRAASPPSPASPARARAARRRPPRHPADDLRAIGPREPAPDASGPYKCEMCALEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -