Ogot040193.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459048.1:11963775-11965823[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-08 9.8e-05 24.0 0.1 8 39 22 52 20 56 0.90 2 2 5.8 8.9e+03 -1.4 0.0 7 21 517 533 516 535 0.86
Sequence Information
- Coding Sequence
- ATGCCCAGAAAACGTATCAGAACAACATTAAGAGGCAAGTATGATATATCTCAGTATGAAAATGCGTACGAAGCAGTCAAAAAAGGAACTTCTTTACGAAAAGCTGCAGAGATGTACGGCGTCCACCACTCTTCTCTTCTGCGATACAAGAATAAAAGAGATGCAGTTACCGAAGAAGGTAACCAGCCTGATGTTAGTATGGGGTATGTAGCCCACAACCGAGTATTTACCCCTGAACAAGAAAGTAATCTGTCAAAATATTTGATCCGCTGTGCGGATATATACTTTGGTCTATCTGTCAAAGAAGTAAGAAAATTAGCATTCGAGCTCGCTGTTAAATATAAGTTAAACACACCTCCTACGTGGACCGAACATGAGGTCGCCGGAGAAGAGTGGTTTCGTTCTTTTATGAGGAGAAATGTGGAATTGTCGGTGCGCACAGCTCAGGCAACCAGTCTCTCCAGGGCAACAAGTTTTAACAAGACCAACGTGCATGCTTTTTACGATAACTTGCAAACTGTCCTTGACCGTGACCACTTTGAACCACAAGACATCTACAATGTCGACGAGACGGGTGTAACAACCGTTCAAAAGCCCGACAGAGTTGTGGCAAAGCGTGGAACAAGACAGGTAGGAGCTGTCACCTCTGCTGAACGTGGCACGTTAGTCACACTAGCCTTTGCGGCAAACGCGTTGGGCAATGCGATTCCGCCAATGTTCGTATTTCCAAGGGTTCGATACCAAGATCATTTTATAAGAGATGGTCCAGTGGGTTCTATTGGAACTGCCAACCCATCAGGCTGGATGCAAGATGAACTATTTGTTGAGTTTCTGAAACATTTCAAGAAACATTCAAGTGCCTCTACATCACATAAAGTACTCCTTGTTCTAGACAATCATTCTTCCCACGTCCATATAAATTCTCTGGATTTCTGCAAAGAAAACGGAATCGTATTACTTTCATTTCCACCCCATTGTTCGCACAAGTTGCAGCCTTTAGATCGATCTGTTTTCGGCCCATTAAAAAAAGCTATAAATTCTACCGCTGATGCCTGGATGCGCAATAATCCTGGAAAAACCATGTCAATTTATGACATCCCCGGAATGATAAAAATTGCAATGCCACTTGCACTGACACAGTCGAATATTCAGGCTGGGTTCCGTAAGACTGGAATATACCCTTTCAACCGGGATTTGTTTCAAGATCTTGATTTTGCTCCGTCATTCGTAACGGACAGGCCAAACCCAAATGATGCGGTAGAAGACGTAATTACACTTGAACCATTGCAGGTAACTGCACCTGCATCAGAAGAATTATTTGTTCTAGCACCTGACGAGGAGTCGCCACCGCTGTCACCTTCCTTGTTGAACGAAGCTTCTATTTCTGAAAACGTGTCACAACTACTAGCCCTGATACAGAATGCAGAGAGTAATAATCCACAAAACTTTGAAAGATCAACGCCGCCGCCCAGACAAAGTTGTGCATTTGAGCCTCATCAAGACATAGCAATACAACCGGAATCAAATATTCCTCCTAGAGATGCTACTGCTGCTCTGAGAATGATACCTTCTGGCCAAAATTACGTCAGTCTTCAACAATCATCACCGCAGCCGTCGACAAGCAAAGAATCTGTATTTTCAGCTGAATTAGTAAGGCCATATCCAAAAGCTGCCCCCCggaaaaaaacaactaaaggtcgcaacacaaaaaagtctactatTTACACAGACACGCCGGAAAAAGATGCTGTAAGAAAAGAATATGAAGATAGACAGAAACGACAAAAATCTAAGCAGGTAAAGAAGACAATACTTAAAGATACTACAGTGAAGAAGTCCAAAGGTAAagcaaagaagaagaagactgaTTCACCAGCTTCATCAGAAGAAGATGAATATTTCTGCCTTATATGTGTTGGAGCATTCAGGAAGAGCAGATCCGGAGAAAAATGGGTGCAATGTCAAGGGGGCTGTAAAATGTGGTCTCATTTAGAGTGTACAGATGGTGGGCGATATTATGTTTGCCACAACTGCGACGAATCTGATTAG
- Protein Sequence
- MPRKRIRTTLRGKYDISQYENAYEAVKKGTSLRKAAEMYGVHHSSLLRYKNKRDAVTEEGNQPDVSMGYVAHNRVFTPEQESNLSKYLIRCADIYFGLSVKEVRKLAFELAVKYKLNTPPTWTEHEVAGEEWFRSFMRRNVELSVRTAQATSLSRATSFNKTNVHAFYDNLQTVLDRDHFEPQDIYNVDETGVTTVQKPDRVVAKRGTRQVGAVTSAERGTLVTLAFAANALGNAIPPMFVFPRVRYQDHFIRDGPVGSIGTANPSGWMQDELFVEFLKHFKKHSSASTSHKVLLVLDNHSSHVHINSLDFCKENGIVLLSFPPHCSHKLQPLDRSVFGPLKKAINSTADAWMRNNPGKTMSIYDIPGMIKIAMPLALTQSNIQAGFRKTGIYPFNRDLFQDLDFAPSFVTDRPNPNDAVEDVITLEPLQVTAPASEELFVLAPDEESPPLSPSLLNEASISENVSQLLALIQNAESNNPQNFERSTPPPRQSCAFEPHQDIAIQPESNIPPRDATAALRMIPSGQNYVSLQQSSPQPSTSKESVFSAELVRPYPKAAPRKKTTKGRNTKKSTIYTDTPEKDAVRKEYEDRQKRQKSKQVKKTILKDTTVKKSKGKAKKKKTDSPASSEEDEYFCLICVGAFRKSRSGEKWVQCQGGCKMWSHLECTDGGRYYVCHNCDESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264555;
- 90% Identity
- iTF_01117146;
- 80% Identity
- iTF_01117146;