Ogot016612.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459037.1:33971909-33973732[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-11 3.7e-08 35.0 0.1 4 40 17 53 16 55 0.93 2 2 1.7 2.6e+03 0.3 0.0 22 34 175 187 175 192 0.91
Sequence Information
- Coding Sequence
- atgtCTACATCCCAGAAATACAAGAAGAGAAAGAGGTGGGAGATGCAGGCAATGTCCGCTGCTATTGTCGCTGTTCGTGAAAAGAAAATGGGATATTTAAAGGCAGCTAAATATTTCAACGTTCCCAGGTCAACTCTATTTAGGTTTGTTAATGATAAAAACTCCCCGATTGAATTGATAACAGATAAACTTATTGGTCGAAGGCCGGTTTTGGGTGTAGAAATTGAAAACCTGCTGGTGGAGTACATATTAACTATGGAGAATAAATTTTATGGGCTGACCAGAATGGATGTGCGTCGACTGGCGTATCAATtagctgtaaaaaataatataaaaaatcctTTTAAGGATGGGTTTGCTGGCAGATACTGGCTAAAGGGGTTTTTAAAACGACAAAGCGAAATGTTGTCCATAAGACAGCCAACTGGAACTTCTCAAGCACGAGCCAACGGATTCACTAAAGAAAGAATGGACGAATTTTACGACAATCTTGAAAAAATCCAGTCCGATAAGTCTTTTCCTGCTGCGCGCATATTCAACGTTGATGAGAGTAGTCTCTCTATAGTCCAgagtaaaattccaaaaattaTAGCCCGAAAAGGAAAGAAACAAATCGGGGCAATGACGTCAGCCGAAAGAGTGTCCTTAATAACTATTGTAATTTGTATGAGCCCTGCAGGAATATTTGTCCCTCCCATGATAATTTTTCCTCGTAAAAATATGACTGAAACTTTAATGAGAGGAGCTCCAGTTGGTTCTATAGGAAAAGCACATCCATCGGGATGGATCCAAACTCACTTATTTACGCAATGGTTTCAACACTTTGTTGAATATGTGAAACCAACAGAAGCATCACCAGTGCTCTTGATTCTCGACGGCCAGTGCAGTCACACCAAGAACATAGAGTTGATAGATTTTGCAAAACAGCATCATGTGACAATCCTGTCACTCCCACCTCAATGTACGCATAAAGTTCAACCACTGGACCGCACTTTCATGGGACCCTTAAAAGCTTATTATAGTGAAGAAGTTCGGGTGTTTCTTAGAGAAACTAATAGACCCTTAACACCATATGATGTTGTTGAGCTATTTGGGAAAGCCTACATAAAGTGCCAAACTGAAGAAATTGCTGCAAATGGTTTCAAAGTTGGCGGCATATATCCATTTAATCGAAATATATTTAATCACGCCGATTACATGGCCGCTGCTGCAGATTTTGAAGAGGATCAAAACCTTCAAGTTCAAACTATTCCAACGACGCTCGCCGCGCCCATGGGTGCTCCTCAGCAATTAGAGAATTTAGTTGAACTTGAGCCAGGGCCGTCAGGTATAGGGACAGGAATTCATACACTTGTTACTCCGTCTGATATTTCTCCCGTGCCCCCAATACAAAAGAGAACAAGCAATAGAGGACGTAAGCCAGCAAGATTGGCAATAATTTCAAGTTCCCCTTATAAGAAGGACCTTGAGACTGCGCATTTTCAAAAGTCTAATAAAGCACAGAAAAAAGCGATTAAGGAAAAAGGCAagcaaaaaaatgcaaaaaagccAAAAAAGAGAAATATGACAGAAAGTGAATCTGCAGATTCTAATTCTGGTGCTATCAATGGAAACAACACAGACTCGTCCGAGGATCAAGCCACGACAAATGAGCGTGCAGTCCCTACTGACGAAGACGTCGAGTGTTTTTTCTGCAACGGTAAATATAGCGAGGATAAGGGGGGTGAAGAATGGATACAGTGCTTAATGTGTGAATCATGGGTTCACACTGCTTGTGGTGGTTATGAAACTGGGGTGTATATTTGTTATTACTGCAAGATCTAA
- Protein Sequence
- MSTSQKYKKRKRWEMQAMSAAIVAVREKKMGYLKAAKYFNVPRSTLFRFVNDKNSPIELITDKLIGRRPVLGVEIENLLVEYILTMENKFYGLTRMDVRRLAYQLAVKNNIKNPFKDGFAGRYWLKGFLKRQSEMLSIRQPTGTSQARANGFTKERMDEFYDNLEKIQSDKSFPAARIFNVDESSLSIVQSKIPKIIARKGKKQIGAMTSAERVSLITIVICMSPAGIFVPPMIIFPRKNMTETLMRGAPVGSIGKAHPSGWIQTHLFTQWFQHFVEYVKPTEASPVLLILDGQCSHTKNIELIDFAKQHHVTILSLPPQCTHKVQPLDRTFMGPLKAYYSEEVRVFLRETNRPLTPYDVVELFGKAYIKCQTEEIAANGFKVGGIYPFNRNIFNHADYMAAAADFEEDQNLQVQTIPTTLAAPMGAPQQLENLVELEPGPSGIGTGIHTLVTPSDISPVPPIQKRTSNRGRKPARLAIISSSPYKKDLETAHFQKSNKAQKKAIKEKGKQKNAKKPKKRNMTESESADSNSGAINGNNTDSSEDQATTNERAVPTDEDVECFFCNGKYSEDKGGEEWIQCLMCESWVHTACGGYETGVYICYYCKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -