Ogot016613.1
Basic Information
- Insect
- Orthosia gothica
- Gene Symbol
- -
- Assembly
- GCA_949775005.1
- Location
- OX459037.1:33989129-33995715[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.014 22 6.9 0.1 1 15 57 71 57 75 0.88 2 2 2.7e-13 4.1e-10 41.2 0.0 1 40 87 126 87 131 0.93
Sequence Information
- Coding Sequence
- ATGGTATTTCAAAGAAATGACGATATGACTTGTTCTAAAGCCGTTAATGTTGAGGGGAAATCCCTACCTATAATCACTTCaatcaacaaaatattttgccgAATAGgtCCTATTTTGTATAGTTTGAAGCGTGAAAAACGTGGCAGGGGTGCAAAACGTTGTCTCTGGAAAGAAGAAGACTTAAGGGCTGCTATGGCAGCAGTAAGAAATGGACATTCTATTAAATTGGTTTCGAAGCATGCAAAAGAACCTAAGTGGACAGAAGATGACTTACGCGCTGCTATGGCAGCTGTAACTGAAAAACATATGACACAGAGAACTGCAGCAAAACGATACGGAATTCCGCTAACAACCCTCTGGGAACATTTGCAATCGGGAAGCTTGGTGAAACGATTGGGACGCAAAATATTCAGCAACGTACAAGAAAAACAACTCGTGGAAAGAATACTACACCTTTCAAACATAGGGATATCTTTTACCTCGAAATTTATTCGCAAACAAGCCTTCGAGTTTTGTGTAGAAAACAATATTAAACATACTTTTAACATCACTACGGGCCTTGCAGGCATCGATTGGTATCGCGGATTTTTAAAACGACACCCAGAGATGAATCCTGTTGGATGA
- Protein Sequence
- MVFQRNDDMTCSKAVNVEGKSLPIITSINKIFCRIGPILYSLKREKRGRGAKRCLWKEEDLRAAMAAVRNGHSIKLVSKHAKEPKWTEDDLRAAMAAVTEKHMTQRTAAKRYGIPLTTLWEHLQSGSLVKRLGRKIFSNVQEKQLVERILHLSNIGISFTSKFIRKQAFEFCVENNIKHTFNITTGLAGIDWYRGFLKRHPEMNPVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -