Onob007441.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- THAP1
- Assembly
- GCA_963555765.1
- Location
- OY743224.1:165645533-165647860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0098 1.1 10.4 1.3 1 23 417 440 417 440 0.97 2 8 6.4e-05 0.0073 17.3 0.5 2 23 468 490 467 490 0.96 3 8 0.00045 0.051 14.6 0.4 2 21 503 522 503 523 0.94 4 8 8 9.1e+02 1.2 0.1 2 13 596 607 595 615 0.79 5 8 9.6 1.1e+03 1.0 1.3 3 20 632 649 631 650 0.92 6 8 1.6e-06 0.00019 22.3 0.3 1 23 657 679 657 679 0.98 7 8 9.6e-06 0.0011 19.9 1.9 1 23 685 708 685 708 0.96 8 8 0.73 83 4.5 0.1 1 15 714 728 714 731 0.82
Sequence Information
- Coding Sequence
- ATGCCGTCTTTTTGTGTAGTGCAAAATTGCGAAGACAAATACACACAGtctgaaaatgtttcttttcaCAAATTTCCACACAGTAGAAAGGATCTTCTTGACAAATGGATTGAATTCGCAATGCGAGGGCCCAACTGGAAACCATCCAAATGGAGCGCAATATGTAGCCGACACTTTTTGCCAGAGGACTTTCGTACTGTTAACTCCAGAAAGACGTTGAAAAAGTCTGCAATTCCATCAGTTAAAGTATCGGACAATGACCATAGCTCTGCGCAGCCACCTGATGAGATTCGCCAAGGAGAACTGCATATACCTGATAGTTCGTGTCGTCTTTGCGGAATTTGCTGCCGACCTGTGGCCACATTTGCGACCAATTTCGAAATATTCGGCATGATCCAAAAGTGCTTCCCTACTTTGAATATCCAACTAGATGATAATCTTCCTAAAGATATGTGCTCTGTGTGCCTGAAGAGGCTCAACAATTTTTCGGAGTTTGTTGATGCTGTTTTGGACACTCAAAAGGTGCTCCAAGGAAAATTTCGTAGCGAAAAGTTCATAAAGCCTCCTGAAAGgcaattgaaaatcaagcagGAACCTGTTGTGAATGTGAAGCAGGAGGTAGCTGAACATTTCGATAGTTTTCTCAGTGATGAATTGGAAGAGGACCAAGACTGCGAGCAAAAGTTCTCCTTCTGCGACTTTCCAATGCTCAACACGCAAGACATCATCAATAATTGCGATATTATGGAGATAATCAACCTCGACGATCCGTTTATTGATATTCCCGATGATGAAAATGGCAACGAAGTCGACCAAATTGTCGAGCAGATGGTGAATTCCAACTTTTTAAGGGCTAACTCTCAACACATTCATAGACTGGATGCTATTAAGATGATAAGTGAACATAACTACGCAATGCCGATAGAGTGCAAGGATTCTCTTCACTTTCCAAGTATTTACAAGACTGAGAAGCCGGAGGAAAAAGATGAAATTGTGATCAGCAACGTACCACCACCCACTTTGATCACAGCGAAAGCCAAATACTCCAATAGTCCAGCGATAGTCAGCGATTCGACTATCCTCAGCAGTAGCATGCGTTACTCTGAACGCTCTCGATCTCCAGGAAAGCTTATGGTCACCTCAGTAAGTGATCTACTGCCTTTGCCGACTGTTGAGACAAATGTTAAGAAGCCAAACATAGTTGTTCTTAACGAGAGCATCGTCAAATCCGCTTCCGCATTCCAATTGTACCCCTGTACCATGTGCCAGTCGCAATTTTTCTCAAACGAAGGACTAAGCCATCACATCAGCAAGGCACATCTGCCGATAGCCCCAATGGTTAAATTGCCTTTAAATAACGTACCAGATGAGCCTTTAACGCAATCGATCTCCAAGTCCATTTCTTGCCCTACTTGCTCAATAAGTTTCACCTCCATTCAAAATCTGATCAAGCACAAACGCAAAGCCCATTCCAAGAATATAGCCAAGAAAGAGAAACATGGGCGGGAGTGCCCTATTTGCGATAAGTTTTTTGTCAGCAAACTGGCTTTCAAAAATCACCGCAAGTATGTTTGCAAATCAAAGCTTAATGCCGTTCCGAACGCATTCAAGTGCCGTTTCTGTTTAAAGGATACCTTCAGTTATTCGAGAATCCATCGGAACCATGAGACTCTTTGCATGCGGAGGCAATCAAAAAAACCAAAGCGATTGGAAAAAATGGTTGATCCTGTTATTAATAATGAAAAGCAAAAGGCACCCTCACCTGTTGACGCTGATTGGAATCTTGTCTGCCTCGGCTGCAACAACAGATTCAGCACTATTGAAATTTTTCGCCTTCATTACATCGAAAAACAGTGCAAATTTATACCCTCTACCGACGAAGTTCTAGCGTTCTGTCGGAAATGCAAGAAACCCATCACCGCGTACGCCAAACTCCGTTCGCATCGACACTTTCAAGCTTCAAAGAAGTATGAGTGCAAGGAATGCCCGAAGGTGTTTGCCACTTCGAATCTTTTATCACAGCACCGTATCACGCACTCTAACATTCGGAAACACAAATGCGAACTGTGTGAAAAAATCTTCAAGAGAAGAGGCGGCCTACAACAGCATATGAAGGGTTACCACTTAAAGATGAAGCCACACGAGTGCGGAGTGTGTAAACGACGATTTGCGTTGAAGGCCGATATGTTTCGATGTAAGCATTCCACGTTAAAATATTGA
- Protein Sequence
- MPSFCVVQNCEDKYTQSENVSFHKFPHSRKDLLDKWIEFAMRGPNWKPSKWSAICSRHFLPEDFRTVNSRKTLKKSAIPSVKVSDNDHSSAQPPDEIRQGELHIPDSSCRLCGICCRPVATFATNFEIFGMIQKCFPTLNIQLDDNLPKDMCSVCLKRLNNFSEFVDAVLDTQKVLQGKFRSEKFIKPPERQLKIKQEPVVNVKQEVAEHFDSFLSDELEEDQDCEQKFSFCDFPMLNTQDIINNCDIMEIINLDDPFIDIPDDENGNEVDQIVEQMVNSNFLRANSQHIHRLDAIKMISEHNYAMPIECKDSLHFPSIYKTEKPEEKDEIVISNVPPPTLITAKAKYSNSPAIVSDSTILSSSMRYSERSRSPGKLMVTSVSDLLPLPTVETNVKKPNIVVLNESIVKSASAFQLYPCTMCQSQFFSNEGLSHHISKAHLPIAPMVKLPLNNVPDEPLTQSISKSISCPTCSISFTSIQNLIKHKRKAHSKNIAKKEKHGRECPICDKFFVSKLAFKNHRKYVCKSKLNAVPNAFKCRFCLKDTFSYSRIHRNHETLCMRRQSKKPKRLEKMVDPVINNEKQKAPSPVDADWNLVCLGCNNRFSTIEIFRLHYIEKQCKFIPSTDEVLAFCRKCKKPITAYAKLRSHRHFQASKKYECKECPKVFATSNLLSQHRITHSNIRKHKCELCEKIFKRRGGLQQHMKGYHLKMKPHECGVCKRRFALKADMFRCKHSTLKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -