Onob007444.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- prdm10
- Assembly
- GCA_963555765.1
- Location
- OY743224.1:165691522-165695918[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00024 0.027 15.5 0.4 2 23 490 511 489 511 0.96 2 11 0.0004 0.045 14.8 1.1 2 23 544 565 543 565 0.96 3 11 0.00023 0.026 15.5 0.9 2 23 586 607 585 607 0.97 4 11 0.0001 0.012 16.6 2.9 1 23 615 637 615 637 0.98 5 11 0.033 3.8 8.7 1.6 1 23 642 664 642 664 0.94 6 11 0.0061 0.7 11.0 8.9 1 23 670 693 670 693 0.96 7 11 0.024 2.8 9.1 2.3 1 23 698 720 698 720 0.98 8 11 0.00022 0.025 15.6 5.6 1 23 726 749 726 749 0.97 9 11 6.4e-05 0.0073 17.3 0.4 1 23 801 824 801 824 0.97 10 11 0.0058 0.66 11.1 3.0 1 23 846 869 846 869 0.96 11 11 0.044 5 8.3 2.6 2 23 901 923 900 923 0.97
Sequence Information
- Coding Sequence
- ATGGCCGAAGATTTGGAGAATTCAgAAAATGTACTGCAACCGAAGAACCAATATCGTTACGGAGCATTCCAAAGGGTCTGCTCATATGATCCTAATATGTGTACTACAGCTGCTCGTTTTGATCCTTACTTTGAAAAGGGAAATGTCTGCAAAGCGGAATCAAACGTAGAtacaacatacaaaaaaattgtttatggaCAGCCAAGCGCTCAGCGCAGTACTGATGTGTCTGACAATAGTTCTTCGAAAACAGTAGATCCATCTTATTTGTCATACAACAACCAAATGTTAATTGAACAACAAAACGATGTTGCAGACGTATTTAAGAACAACCAAATGGAACATACTGTGACAGCGAATGAGAAAAACCCAAATGTGTCTGCTCTCAGCAATGGAGTTGGAATTGATTACATTCAACAAATCGACCAGGGGATAGACGATGTAACGGGAGAACCAATTACAACAAGCATAGTCCTACATCGTTCACCCAATGGCCATTTATATCAAAGTTTGTATGTAACAAATGACGATGGTAGTCCAGGAGAGATGGTCGAGCTGGTTCCAATAGATAGTTGTGAGTCAAATCATTTGGCAGAAATCAACACTGATAGCTATGCTCTGCAACCTTACGAGTTTCCCAGCGAATGTAATATCGATGCGCTTGAAGCTCATTTGCAAACAGAAAACCAGGAAATGGATGTTATGGACGAAGAGAACCAGAAGCAGATGATGATAGCTCAAATGCTTGAAAGAGCTCAACAAAGAATACTGTTGGAGAGCACAATGTCTCCGTTGCTTGCGGCAGTGAACGATATTACGCAGAGGGATGCTGAACTAAACTCTTACCTAAACCAGCAGGTACAAAAAAGTGATGATTTCAATGACAAAGTTTACGACAAAGAGGAATACAGAACAGAGTTTGAAACGCAATATTCAACACAAGAATCGTCAGATGAGGATGATGACTACATTCTAGTGTCAGATAAACCCGTCGAGAGCCGGGCGAAAGCAAGCCTTCCCAATAACTATCTTTACCTTGGAAGTGTTAACAATGAGACAAATGAACCTTCAGtctttgcaaaaaagtcgattcCCCAGAGAACAAAATTCGGTCCCTTCGAAGGAGAAATCCGTTTCACCAGTGATGTCTTCTTAAATATCCTACGTTCACAACAACCACGACATTATCCCCTACTATTAGTTGGAAAATCAAGAGTTCTTATTGTAACCAACGAAaACACTTCCAATTGGATGCGATTTGTTCGCCTTGCCCAGTCATACGCAGAACAGAATTTGCAACTTATCGAAGAAGATGgtcaaatctttttcaaatgCAATCGATGTATTCATCCGAAAGAAGAACTGCGTGTGGGATATCATCAATCTTACGCGATAAAGAACAACTTACCAATATTAGAACCATCCCAAGAAGATACTCAAAAGAAATACGAGCTTGCTAATCCATGGATGTGTTTTGAATGTGATCAACGGTTTAAAACAGCACAAGAAATGCAAAAGCATTTAGAAATTCACGACGCAGAAGATGCAACTCgaattatttcaaagaaaaaaccccaaggaaaaaagaagaaaattaagaaactgTCCGAACTGCCCAAAAATTCAAGCCgctgtttgatttgttttaaggtTTTCATGACGAAcgcaagtttgaaaaaacattttgccaCACATTTAGCGACGAAAAAGTCGAAGCTCAAGTATTCAACGAAGCCATCAGGAAGTTCTCCACAAAAATGTCCATTatgccaaaaaatgtttttttccgaGGAAAAACTTAAGCTGCATCAAATAATGCATGTAACCAACGAAATGAAACCGCACAAATGTCCTCATTGCGACCAGCATTGTGCCACTCCAGCTGCACTGGCAGCCCATGTTCGCAGTCACACCAATCGCCTTTATTCATGTGTTTTCTGTCAACAAACATTCAAATATGTgatggattttaaaaagcacgtTGTCCTACACTCTTCCGAAGGATCATACTGCTGTGTTCACTGTAAAAAGACTTACAAAGAATATCACCTGCTCCGAAAACATATCAGAATCTTCCATCCAGCAGTGAAATATCCCTGCAACGAGTGCGACCGGTTATTTCTGCATATGAGCTTTTTACGTCGTCACAAGGCAACGCATGCTAAACAAAAGGTATATCAATGCTCCCAATGtgaggaaaaatttaaaagaagacACGACCTCAGTCATCATAGAAAAATCATTCACAAGACAAAGCGAAAGGTTAAAAAGCAAGCAACAAAAGCAATACCTATGGTCGACGACGGCACACAGCCCATTCAACTAACACCGAAGAAAAATGTGTCGATAGTTGTGAATGAGCTTGGTCCCAGATCTTCAGAGGAATACCGCCAATACCAGTTTAAATGTGAGGACTGTAAAGTAGGTTTCAAAAGGCGAGGAATGTTGGTCAATCATATCGCTAAGAGGCATCCCGATCGTAACATCGATTCCATCGATGAGTTAAATCAACCGATAGTTAAACTTCAAACTGTCTTTAATTGCCTTCACTGTTCCAAGGTCTACAAGAACAATGCAAAACGCAAGGCACATATTCTTAAAAATCACCCCGGATTGGAGGTTCCCCCGTCTTTTCGCAGTAATCCAATATTAAGTGACAGCAATGTTCAGACTGTAGGCTGCGTAAGGACTGATGTGCAAAAGTGTCAACTCTGTTATAAGCAATATGCGTCCCGTACTCGTCTGCTTACGCACTACCGCAAGTCTCACTTGAACGCGAGAGTTCCAGACATCTTTGTACCTGGATCACTTCCTTCTCAAATTCTGATTGAAGAACAATGCGTCCAACCGGTCATGCATATCTACAGACCACCAGTGTCGCCTgagaataaacttttaaaattatcctCCGCAGCTCTTGAACTATCTAGTATTGAagacagaaaatattttgatttcttaaacgAGCGTTCGGACATGACTGATATACCAGACACCAGCAGCAGGAGCAACTACAAGATTGTGGAAAGCGAATTTGGGGAGAGTTCATCGAACACCGAATTACATCGACTACCTGAGTTGTTTGAGGAGTCAATAGCATGTATATAA
- Protein Sequence
- MAEDLENSENVLQPKNQYRYGAFQRVCSYDPNMCTTAARFDPYFEKGNVCKAESNVDTTYKKIVYGQPSAQRSTDVSDNSSSKTVDPSYLSYNNQMLIEQQNDVADVFKNNQMEHTVTANEKNPNVSALSNGVGIDYIQQIDQGIDDVTGEPITTSIVLHRSPNGHLYQSLYVTNDDGSPGEMVELVPIDSCESNHLAEINTDSYALQPYEFPSECNIDALEAHLQTENQEMDVMDEENQKQMMIAQMLERAQQRILLESTMSPLLAAVNDITQRDAELNSYLNQQVQKSDDFNDKVYDKEEYRTEFETQYSTQESSDEDDDYILVSDKPVESRAKASLPNNYLYLGSVNNETNEPSVFAKKSIPQRTKFGPFEGEIRFTSDVFLNILRSQQPRHYPLLLVGKSRVLIVTNENTSNWMRFVRLAQSYAEQNLQLIEEDGQIFFKCNRCIHPKEELRVGYHQSYAIKNNLPILEPSQEDTQKKYELANPWMCFECDQRFKTAQEMQKHLEIHDAEDATRIISKKKPQGKKKKIKKLSELPKNSSRCLICFKVFMTNASLKKHFATHLATKKSKLKYSTKPSGSSPQKCPLCQKMFFSEEKLKLHQIMHVTNEMKPHKCPHCDQHCATPAALAAHVRSHTNRLYSCVFCQQTFKYVMDFKKHVVLHSSEGSYCCVHCKKTYKEYHLLRKHIRIFHPAVKYPCNECDRLFLHMSFLRRHKATHAKQKVYQCSQCEEKFKRRHDLSHHRKIIHKTKRKVKKQATKAIPMVDDGTQPIQLTPKKNVSIVVNELGPRSSEEYRQYQFKCEDCKVGFKRRGMLVNHIAKRHPDRNIDSIDELNQPIVKLQTVFNCLHCSKVYKNNAKRKAHILKNHPGLEVPPSFRSNPILSDSNVQTVGCVRTDVQKCQLCYKQYASRTRLLTHYRKSHLNARVPDIFVPGSLPSQILIEEQCVQPVMHIYRPPVSPENKLLKLSSAALELSSIEDRKYFDFLNERSDMTDIPDTSSRSNYKIVESEFGESSSNTELHRLPELFEESIACI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -