Onob022907.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- -
- Assembly
- GCA_963555765.1
- Location
- OY743227.1:59825691-59828612[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3 1.5e+02 3.7 1.7 1 23 225 249 225 249 0.91 2 13 0.014 1.6 9.9 3.2 1 21 255 275 255 278 0.80 3 13 3.1 3.6e+02 2.5 0.5 1 9 283 291 283 293 0.87 4 13 0.38 43 5.4 3.8 1 13 312 324 312 336 0.77 5 13 1.2e-05 0.0013 19.6 3.7 1 23 342 364 342 364 0.98 6 13 0.0042 0.48 11.6 1.1 1 23 370 392 370 392 0.95 7 13 9.1e-05 0.01 16.8 0.9 1 23 398 420 398 420 0.98 8 13 2.2e-05 0.0025 18.8 1.1 1 23 426 449 426 449 0.92 9 13 8.1e-06 0.00092 20.1 0.8 1 23 464 486 464 486 0.99 10 13 4.4e-06 0.0005 20.9 1.8 1 23 491 514 491 514 0.96 11 13 4.7e-05 0.0053 17.7 1.7 1 23 520 542 520 542 0.97 12 13 0.0003 0.034 15.2 0.3 1 23 547 569 547 569 0.97 13 13 1.2e-05 0.0014 19.5 1.0 1 23 575 597 575 597 0.98
Sequence Information
- Coding Sequence
- ATGTGCAGTGTGTTCAAATTAGatttaaacaaatacaacaTAGAGGATGCGTGCAGAACTTGTGGTAAATGCGATGTGATCACCTCTGTGAGTTTGGTCAATATTTTCTCTGCCCAGCCTGAATCTggtgaaaatatcaaaattctaCGAGAATTCGATCTGTGGAAACTTACTATCTCAGAAGACGACGGCCTCCCGCAAAAAGTTTGTAAACAATGTTTTGGCAAATTTACGCTCGTCCACAACTTTCGCAAACAATGTGAAAATATTCAGAGTGCGTTTAAAATTCTACTTTACGAACAACGTAGATTGGGTGCCAAGAATGTGAAAGCAGACTTGCAAAGTCAAACGGTGCAGGTGAAACCCAAAGTGGAAACAGAAACGCAACAAAAATCAGATGGAGATGATGATTTTGATTGCTTCGATGAGATTCCATTTGAGGACGCTGAATACAAGGATGTCGAATATTTTGAACTTCAACCCAACAAGGAACTTTCACAGCACGAACAAAACAATAGGCCAGTAGAAAGTGAAGCGGAAGGAGACGAATGGATTACAGTAACCAGAAATTTAGTACCAAAAGAAGAAGACGAGTCGAGTCTTAGTTCCGATTTGTTAAGCTCTGACGATGAGAGGAAATTAAATCGGAAGAGCAGAGTCAAGCCCAACCAATTCAAATGTGAGTACTGTAAGAACTTCTGCCTCGAAAACCAGGAAGAACTGGACACACACGTTAAAGAGATACACTCTACGGACACGCCATACACATGTCCGTTGTGCACAAAATCGTTTAGCAATGCGAAGCAAAGGAACTGCCACTTTATGGTTAGCCACAAATGGAAGTCGCACGAGTGTGATATTTGTCATAAAATGATTAAGGGCGGCAAGCCGGGACTAAAGAACCACAAGGACAATGTGCACAACAAGTCCAACCATGAGTgtaatatttgccacaaaaagtTCGAGAATATTTCGCTGAGTAGATTTAGATATCATCTGCGTTGGCACGACAGTTCGAAACTGTTCTCATGTAAGTCTTGTGAGAAAACATTTGTCACCCGATACCATCTGGAGGAGCACGAGCGGACGCACACCGATGAGAAGTCATTCCTTTGCAGTATTTGTGGTCTAGGCTTGCGCTGCAAACAGAACTTGATATGGCACATGAAAACGCATACGGGAGAAAGGACATATCAGTGCAATCAGTGCAATAAAGCGTTCCCAACACCAACAGCCCTGGCGTGCCATGTAAAGACGCACAGTAATGAAAAGAAACATGAATGTGAGATTTGCAACAAACTCTTCAAGACGAAAGGCAGCCTCAAGACACACATTGGCAATGTGCATAAGGTGGACTTTAACGAGGGAACAGTAAACTCCTCACCCCGCTATCAGTGTCAGCTCTGCCCGAGAAATTTCATATTTGAGCGTGATCTCATCAAGCACTTGAGGACGCACGAGCATAGGCGGCACGTCTGCGATGTTTGCGGTTTGTCTTACATGCAATCGTCACACTTAAAGAAGCACATGGAATCCGTGCACTTAAACTACAAACCACATGTGTGTTCCATATGCGGTCATGCTTTTCCTTTCGAATATAATCTCAAGCAGCACGAGCTAACTCATAAAGaaaaagaattcaaatgtaTAGTGTGTGATAAGGCCTTTACGTTGCTTCCATCGCTGTTGTCACATCAAAGAACGCACACGGGCGAAAAGCCTTTCGAATGCCATCTCTGTGAGAAGGCATATGCCAACCGAGGGAATCTGAAAAGTCATGTTGAGAAGCATTTGTTGGAGAAGAAACAAAATCAGACATTCTCTCAAATTGTTTTACCAGTGATTCCGTCTTCAGCTGAGATTCCACCAGCGCCATCGATTAATCTTTATGACATGAACAGCCAACTGCCCAGCACGGATCAACAAGTGTTTACGAATCAATTACAAGAACTGTGA
- Protein Sequence
- MCSVFKLDLNKYNIEDACRTCGKCDVITSVSLVNIFSAQPESGENIKILREFDLWKLTISEDDGLPQKVCKQCFGKFTLVHNFRKQCENIQSAFKILLYEQRRLGAKNVKADLQSQTVQVKPKVETETQQKSDGDDDFDCFDEIPFEDAEYKDVEYFELQPNKELSQHEQNNRPVESEAEGDEWITVTRNLVPKEEDESSLSSDLLSSDDERKLNRKSRVKPNQFKCEYCKNFCLENQEELDTHVKEIHSTDTPYTCPLCTKSFSNAKQRNCHFMVSHKWKSHECDICHKMIKGGKPGLKNHKDNVHNKSNHECNICHKKFENISLSRFRYHLRWHDSSKLFSCKSCEKTFVTRYHLEEHERTHTDEKSFLCSICGLGLRCKQNLIWHMKTHTGERTYQCNQCNKAFPTPTALACHVKTHSNEKKHECEICNKLFKTKGSLKTHIGNVHKVDFNEGTVNSSPRYQCQLCPRNFIFERDLIKHLRTHEHRRHVCDVCGLSYMQSSHLKKHMESVHLNYKPHVCSICGHAFPFEYNLKQHELTHKEKEFKCIVCDKAFTLLPSLLSHQRTHTGEKPFECHLCEKAYANRGNLKSHVEKHLLEKKQNQTFSQIVLPVIPSSAEIPPAPSINLYDMNSQLPSTDQQVFTNQLQEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00310521; iTF_01396011;
- 90% Identity
- -
- 80% Identity
- -