Onob000598.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- -
- Assembly
- GCA_963555765.1
- Location
- OY743224.1:5683967-5688691[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.02 2.3 9.4 0.7 1 23 151 174 151 174 0.95 2 12 1.4 1.6e+02 3.6 0.2 2 23 190 210 189 210 0.91 3 12 0.072 8.2 7.7 0.9 3 23 326 345 325 345 0.96 4 12 0.0055 0.62 11.2 3.3 1 23 351 374 351 374 0.96 5 12 3.6 4.1e+02 2.3 1.1 2 23 407 428 406 428 0.90 6 12 0.00016 0.019 16.0 1.9 1 23 434 456 434 456 0.95 7 12 6.5e-08 7.4e-06 26.7 1.0 3 23 468 488 466 488 0.97 8 12 0.00012 0.013 16.5 1.4 1 23 495 517 495 517 0.98 9 12 1.2e-05 0.0014 19.6 0.9 2 23 523 544 522 544 0.96 10 12 4.4e-05 0.0051 17.8 1.0 1 20 550 569 550 572 0.93 11 12 0.0017 0.2 12.7 0.2 2 19 578 595 577 597 0.95 12 12 8.9e-06 0.001 20.0 0.2 1 23 604 627 604 627 0.98
Sequence Information
- Coding Sequence
- atgtttgacgCATTACCAATATGTAGAGTGTGTTTAAAAACCTCCCTCGAATACATAGATTTCGACACACCCTTTGAAGCCGATTTCAATAAGGACGTGGATTGTGAACTTACTTATTTAGATTGTTTCATGGCGTGCACGCGCCTGGAGATTGAAGTTAACGAAAACTACTCGCAAAGCTTGTGTAGTGCTTGCGGATTCGAACTGAAGATTGCATACGAATTTCTTCAGAAAGCCGAGTCCGCGGATAGAGCCTTAAAAGAGTTTGCTTTGAATGCAAAAGTGGAAAAGCTGGAAGATGATGAGGAAATATCTGCATTGCAACAAGACGCTTGTCTGTTATATGAGCAGATCAACTCGGAAGAAACAAGCAAACATGATGATCAAGGTGCTGCTTCTAACACCGAACCAGCGGAGCGTAATCAAAATCCAACTGATGATGaaaaaacgtttAAGTGCATTGTTTGCGGGAAGCAATTCTTTTCGCAAATGGTCCTGAATTTACATGTAAATCGTTCGCACTCCAGTGATAACGGGAAGGAACGCAATATAAATGTACAAAAAGTGGAATGCCAGATCTGTGacatatttttgccatttgatAAGCTAAGCACTCATATGAAGCTGCACGAGGATGAAGACAGCGTTGAGCCGGAGTCTAATTCGAATTTTGCAGCAGTGAATAATGATGAACAACTGATTGATGTCGGAGAAGAGGGTGAATTTGAGTTATTAGAAATGGCTTGCGACTCCCCATTGGGAACAGCAAACAATTCGAGTCCATCTGCAAGTCCCGAACCAGAGAAAAACACAACCGAGGCAGAAGAATATGACTCGAATGCTGTTGTAATTGGAGAAGACGATGAGCGCCCAAAGACTGAGTTAGAATTCGATCCAGACGCCAAATTTATGGTGCTTGATAAAATTCTATCGGATGAAGAGAAAATGcgttttaaaaaagcaaactaCAGGCATTGTTCAATTTGTAATCGGTATGTTAGGGCTTCGTCCTTTGATGCACACATGAACGTCCACAATGGTGATCGGCAATTTTCATGCGATCATTGCACTGGGAGCTTCTTCTCGAAAAGATCTCTTCAATTGCACGTAAAGAATATGCATAAAGATCAGATAAAATCTACGTGCAGAATATGCAATGACACAGTCGAGTGTGGGGATATGAAAACACATGTAAACGAAAACCATTTACGGTTGGTAAAGTGTACTCAATGCGACTATCAAGGACAGGAGATTAAAATGAAGGAGCACATGAAACGAAGACATGCAGAATCCAAGGACTTCCTGTGTAACATATGCTCTAAGACATTTTGTACTCTTGGGGTTCTTAATGCCCACTTAAAATATCATGAGCGCAAGGAGTCCAATGTAAAGTCAGATGCTTGTGAAATATGCGGGAAAGTTTTCTCGACCAATCACTATCTGAAATCGCACATGCTTACGCACCGAGACGAGCGCGAAGTTTTCGAGTGCAACAGTTGTGATAAGACATATCACTCAAAAGCCGCTCTGGACAATCATGTGCGAATGCATAAAGGTGATACAATAAAGTGTTTGCTTTGTACAAAGCAATTTGCACGACAATATGAACTCAATGTTCATATGCGATTTCATACGAAGGATTATCCTTTCGAGTGTGAGCTATGTGGCAAGAAATTCGCCATTAAAGGCCACCTAAGAACACATATGTGGCGCCATCAAGGTCTTAAACTTCAATGTGAAGAATGTGGCAAACTCTTTACATCGACTAAAGCCCTGCAAGAGCATTCCTTCTGTCATTCAGAGATGCCATTCCCATGCCCGTATTGCCCAAAGGCATATCCCTCAAAACCAAAATTCAAAGTCCATTTGAAAACTGCTCACATGGTGGAATTCTCGAATGACGAATTACAGAAAATGAGCAAATTCCCGCTTCCAAAACGCTCCAGATCGAAGAAGTTCACATTAGTTCAGGCCGATACAGTGATGAAAGAAATCGAAGTTCACACCAAAGATGAAGAGGAAGAACAGATAAAAATTGAACTTGACACCTAA
- Protein Sequence
- MFDALPICRVCLKTSLEYIDFDTPFEADFNKDVDCELTYLDCFMACTRLEIEVNENYSQSLCSACGFELKIAYEFLQKAESADRALKEFALNAKVEKLEDDEEISALQQDACLLYEQINSEETSKHDDQGAASNTEPAERNQNPTDDEKTFKCIVCGKQFFSQMVLNLHVNRSHSSDNGKERNINVQKVECQICDIFLPFDKLSTHMKLHEDEDSVEPESNSNFAAVNNDEQLIDVGEEGEFELLEMACDSPLGTANNSSPSASPEPEKNTTEAEEYDSNAVVIGEDDERPKTELEFDPDAKFMVLDKILSDEEKMRFKKANYRHCSICNRYVRASSFDAHMNVHNGDRQFSCDHCTGSFFSKRSLQLHVKNMHKDQIKSTCRICNDTVECGDMKTHVNENHLRLVKCTQCDYQGQEIKMKEHMKRRHAESKDFLCNICSKTFCTLGVLNAHLKYHERKESNVKSDACEICGKVFSTNHYLKSHMLTHRDEREVFECNSCDKTYHSKAALDNHVRMHKGDTIKCLLCTKQFARQYELNVHMRFHTKDYPFECELCGKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFCHSEMPFPCPYCPKAYPSKPKFKVHLKTAHMVEFSNDELQKMSKFPLPKRSRSKKFTLVQADTVMKEIEVHTKDEEEEQIKIELDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -