Basic Information

Insect: Orthonevra nobilis
Gene Symbol: -
Assembly: GCA_963555765.1
Location: OY743226.1:35758831-35765226[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.025 2.9 9.1 1.2 2 23 233 255 232 255 0.93

2 10 0.0059 0.68 11.1 0.2 6 23 264 281 264 281 0.98

3 10 4.3e-07 4.9e-05 24.1 0.6 1 23 287 309 287 309 0.99

4 10 5.7e-06 0.00065 20.6 0.5 1 23 315 337 315 337 0.97

5 10 0.00041 0.046 14.7 0.5 1 23 343 366 343 366 0.93

6 10 7.5e-05 0.0085 17.1 0.3 2 23 373 394 372 394 0.96

7 10 0.0039 0.45 11.6 0.3 2 23 403 425 402 425 0.94

8 10 0.016 1.8 9.7 0.4 1 23 432 455 432 455 0.92

9 10 7.5e-07 8.6e-05 23.3 1.9 1 23 461 483 461 483 0.98

10 10 1.1e-05 0.0012 19.7 5.0 1 23 489 512 489 512 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.025	2.9	9.1	1.2	2	23	233	255	232	255	0.93
2	10	0.0059	0.68	11.1	0.2	6	23	264	281	264	281	0.98
3	10	4.3e-07	4.9e-05	24.1	0.6	1	23	287	309	287	309	0.99
4	10	5.7e-06	0.00065	20.6	0.5	1	23	315	337	315	337	0.97
5	10	0.00041	0.046	14.7	0.5	1	23	343	366	343	366	0.93
6	10	7.5e-05	0.0085	17.1	0.3	2	23	373	394	372	394	0.96
7	10	0.0039	0.45	11.6	0.3	2	23	403	425	402	425	0.94
8	10	0.016	1.8	9.7	0.4	1	23	432	455	432	455	0.92
9	10	7.5e-07	8.6e-05	23.3	1.9	1	23	461	483	461	483	0.98
10	10	1.1e-05	0.0012	19.7	5.0	1	23	489	512	489	512	0.98

Sequence Information

Coding Sequence: atgcTGTGTATTTTGTGCTTGACCCCACCGACTAACTCAATAAGTATATTTGACCTACACGGACGAAGTTTAAACGTCGGCGGAGTTATAACCAAACACTTTTGGCTACAGCCAAATGAAGATAATCCAAACGCTAGAGTTATTTGCAAAACATGTTGGGAGGCATTAATCGCGTTTCACAAATTCTACCAAAAAGTAGAGGAATCTCATGAATCCTTGACGGCGGCGGCATGTGTCTCAATCGTTGATAAAGTTGAAGAAGAAATCCATTTGAAGGAAGACATAGTCGACGATAAATTCATTGATGCACCTGACGACAAGACTGGGGAACAAGAATCATTAAACAAGCCCATCTTCTCGAACGAAGGTACGAACATTGAAATTCGCAATGTAACGAAATCTGAGCCAGACGTCATTGAAGAAGCCACGGCAGATCCATTGGAAGAAGTCAGAGTAAAAAAAGAACTAATGCAGGAAGTGAATTCGGACTCGGAATCGGAGATTCCCCTCTCTAGATTATCCGATCAACGGAAATCACACGAACCAAGAAAGCAAAGTCAAAACATTGCCAATAACCTCAAGTGCCTTGCAACAAAATTCGAAGGAATTTGGAGTGTAACTTCGTACCACGATGAGATTGAAAAGCCAATGGGTTCCCAGGACTTGGGTCAAATAATTAATCAGAATATTGATTTATCTTGTACCGTTTGTCAAAAGACATTCGAGGATTTCTTTGTTTTCCGGGATCACTTCCAAAAGGCCCACAACGAGCCGGGCTACGTTGCTTGCTGCGATAAGAAATTCACTGTGCGGCGAAACCTTGTCGACCACATTCTGCTTCACAAATATCCCAATTATTTCAAGTGTGACAAGTGTCCCAAAGTATTGGCCAGTCGTAAAAACCTAAAGGAACACATGAGAATACACGACAGAAAGTTCATCTTCCCTTGTGGCAAATGCAGCAAGGTGTTTGATCGGAAACTAATGCTTCAACGCCACATGGATATACACGTTGCGGAGCGTACTTTCAAGTGCGAACAGTGTGATAAGCTCTTCGCATCGAAATTCTCCCTGGGCCAACACATCTACGGTATACACAAAGGAGGATACACAAAAGTGTGCGATCAATGCGGGAAAGTAACGCGTGACAAAGAAGCTTTTGTTCGGCATCAGCTGGAGCACACGGGCGCCCCAAAACCATATGTGACGTGTGAACAATGTGGCGCTAAGCTTGCCAATAAAAATGGCCTCAGGAAGCATACCCAGGAGAAACATCCAAACTCTGGCACTATGCACGTCTGCAATGTTTGCGGATCCACGGCAACGAGTACCATTGCCCTGCGGCGTCACATTACCTTCATGCACAAATATGAACGATCGCATAAGTGTCCGATGTGTGACAAGGCATTCAAGAGAGCTTTGACGCTTAAGGAGCATATGACAACGCATACGGGAGAGGTCCTCTACACATGTCCACATTGCCCGAAAACATTCAACTCAAATGCCAATATGCATTCGCATCGAAAGAAAATGCATCGCAAAGAATGGGAGGAGAATCGGCGGTACCCGCATGCAGTTACCGCCGCCAACACAGAATAG
Protein Sequence: MLCILCLTPPTNSISIFDLHGRSLNVGGVITKHFWLQPNEDNPNARVICKTCWEALIAFHKFYQKVEESHESLTAAACVSIVDKVEEEIHLKEDIVDDKFIDAPDDKTGEQESLNKPIFSNEGTNIEIRNVTKSEPDVIEEATADPLEEVRVKKELMQEVNSDSESEIPLSRLSDQRKSHEPRKQSQNIANNLKCLATKFEGIWSVTSYHDEIEKPMGSQDLGQIINQNIDLSCTVCQKTFEDFFVFRDHFQKAHNEPGYVACCDKKFTVRRNLVDHILLHKYPNYFKCDKCPKVLASRKNLKEHMRIHDRKFIFPCGKCSKVFDRKLMLQRHMDIHVAERTFKCEQCDKLFASKFSLGQHIYGIHKGGYTKVCDQCGKVTRDKEAFVRHQLEHTGAPKPYVTCEQCGAKLANKNGLRKHTQEKHPNSGTMHVCNVCGSTATSTIALRRHITFMHKYERSHKCPMCDKAFKRALTLKEHMTTHTGEVLYTCPHCPKTFNSNANMHSHRKKMHRKEWEENRRYPHAVTAANTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -