Onob018889.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- -
- Assembly
- GCA_963555765.1
- Location
- OY743226.1:80815287-80817870[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.044 5 8.3 0.3 2 23 15 36 14 36 0.95 2 16 0.12 14 6.9 5.8 1 21 42 62 42 65 0.89 3 16 0.0015 0.18 12.9 0.1 3 23 70 91 68 91 0.94 4 16 0.00049 0.055 14.5 0.1 2 22 100 120 99 120 0.94 5 16 6.3e-05 0.0072 17.3 0.8 1 23 128 150 128 150 0.97 6 16 0.0016 0.18 12.9 2.0 1 23 156 178 156 178 0.97 7 16 0.00023 0.027 15.5 2.6 1 23 184 206 184 206 0.95 8 16 1.7 1.9e+02 3.4 3.2 1 23 435 458 435 458 0.96 9 16 0.069 7.9 7.7 1.1 2 23 483 504 483 504 0.96 10 16 0.34 39 5.5 4.0 1 23 512 536 512 536 0.95 11 16 0.0015 0.17 13.0 0.2 2 23 541 562 540 562 0.97 12 16 0.0006 0.069 14.2 0.3 2 22 574 594 573 594 0.93 13 16 0.00072 0.083 14.0 1.1 1 23 602 624 602 624 0.93 14 16 1.3e-05 0.0014 19.5 3.5 1 23 630 653 630 653 0.97 15 16 0.00011 0.013 16.5 0.3 1 23 659 681 659 681 0.97 16 16 0.0028 0.31 12.1 1.1 1 21 687 707 687 708 0.94
Sequence Information
- Coding Sequence
- ATGACGGTTCAAATCACAACTGACAAATCCGGCCCAAAATTAGTATGTCCGATTTGCAACAAGTCCTTGCTGTCGCTCAATGGCTACATAAAGCACACGAAGAAGCATGAACCGCCGGGTGGATTTTGTTGTAACTATTGCGAAGAACGTTTTTGTTTAGAGGAACTccttaaaaaacacaaagacGACAAGCATCGGGTTCTGGCCTGCCAGATATGTTATACTACCTTTGCAACTGCACAGGAATATCGCTCACACATCAAGGACATTCACAAAGGCGTCGATCGCCCAATGTCTGTTTGTGAAAAATGCGGTATGGAATTCAAAACCCAACAAGCTGCAAAAAGACATATGGAAACACAGTGTGGTCAGATAAAACCACATCCGTGTGACGAGTGCGAAATGGCGTTCTACACAAAATACAACCTGGCGGAGCATAAAAAAATCCACAGGGGTGAAAAGAAGTTCTGCTGCAGCTATTGCGGGAAAAGTTTTCTCAGCAATGGAAGGCTAGTAATCCATGAGAGAAGTCACACGGGCGAGAAGCCGTATAAATGCGATGTCTGCGGTAAATGTTTTGCCCATCGTGAGAGCATAGTGACTCATTCCTCAATCCATACTGGAGTTAAGTTAGTAGTGTttcCTGCCAGTCTTATGTCGTCAGAGATAAAGATCGTTCGAGCAAGTAAAGTTTTGATTCCGAACGAAGAGATCAAGAAACCTAAGAAAATCATTCCAAAGCCTCGTGAGCTCAAGCCTGAATCAGAGGATGAAGTTATCATCAAAAGACCTAGAAGAAGTCAGCGATCGATAGAGGCGACTACTACAGTTGAAGAAGAAACTGAAGCAAAACCACTAGAGGTCCAAACAAACAGCTACGAATCAGATGATTGTTATGATGATCCACCAACTTTTGAAAGCCAAGGAGAGTCGGACCATTCTTCAGATAGTGAAAAAACTGATTCGAAGCCGGAGAGCTTTATTGATTCTCCAATGAAGGCGGAAGACCAAGCCCCTGTTGAATCTGACCTTCATGGAGGCCAACTTCTCAATGACCTACTTGCGCCTAAAGATGAACTGCTGGAAGACATAAAAGAAGAACTAGTggataaaaacaacattaatcGCCAGATCATCGAACCAAGCAAAATAGTTGTTGAAAAAGACCTCGAGCAATATGGACAGTTATCATCTTCGACATCTACCCTGGAGGTTTGTAGGCCTACAGACAATAAGCCTCAGATCAAACGGCACCGATCATCTTTGCGTAAGAAACTgcgcttttttaaaaaagatcgcATTTACAACTGCAAGTTCTGCGCGAAAATGTACCACATCAGAAAACCATATGAGAAGCACCTTCGCGAGCAGCATAATACGACTGACGATGAACTGCGTACCATGTTTAAGGAAGAGGAAAACGATATTCCCGCCGATCTTGTCAATCGTTGCCCAATCTGCTCTAAAGTTTACCTGATGAAAAAACGACTGAAAACCCACATAACTTATCATGGTCCCGATGGTGGTCTTACGCATAAATGCCCTTGCTATTGCAAGAATTATTTCAGCACCAAGGAGGAAGCCATGGAACACGCCAAGATCAAACATAAATCGGCCATTTACTGCGGTATTTGTGACAAATACACACAATCACCAGAAGCTCTTAAGATTCATAAACGGTCACACTCCGAGCGGAGGAAGCAAATTGACAGAAATCTAATCTGCGACAAGTGTGCCAAATCTTTTGCGAGCCGAACCTCTCTGAACGACCATACACGTTCGAACTGTGGACAAAACCCATTGTATCACTGCGATATCTGCGATAAGCGATTCAGCACAGCTGGCATACTCAAGACCCACTCTTTGCTGCACAAGGATGATACACCGTATGTTTGTGATAAATGTGGTAAGGCCTTCAAAATTCAATCGCAGTATAAGACTCACCTGAGACACAAGCATTCAGAGGATAAACCATTCAAGTGTGAGctctgtCCGAAGCAATACCCTTATCGAGAGAGCCTTCTTACCCACATGGCCCTTCATACCGGACTAAAGAGATATGCTTGCACCGGATGCAGCAAACGTTTCACCTGTATTTCAAACCTTCAAGCTCATAGAAAAGTCTATGCGGACACGTGCGGATTGCAGCCGTTAAATTCGAAGCCGAGCCAGTACATAGGAATGCAAAAGGGGCTGCTTCTAATGGGCACAAAACCTTCTTtttaa
- Protein Sequence
- MTVQITTDKSGPKLVCPICNKSLLSLNGYIKHTKKHEPPGGFCCNYCEERFCLEELLKKHKDDKHRVLACQICYTTFATAQEYRSHIKDIHKGVDRPMSVCEKCGMEFKTQQAAKRHMETQCGQIKPHPCDECEMAFYTKYNLAEHKKIHRGEKKFCCSYCGKSFLSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVFPASLMSSEIKIVRASKVLIPNEEIKKPKKIIPKPRELKPESEDEVIIKRPRRSQRSIEATTTVEEETEAKPLEVQTNSYESDDCYDDPPTFESQGESDHSSDSEKTDSKPESFIDSPMKAEDQAPVESDLHGGQLLNDLLAPKDELLEDIKEELVDKNNINRQIIEPSKIVVEKDLEQYGQLSSSTSTLEVCRPTDNKPQIKRHRSSLRKKLRFFKKDRIYNCKFCAKMYHIRKPYEKHLREQHNTTDDELRTMFKEEENDIPADLVNRCPICSKVYLMKKRLKTHITYHGPDGGLTHKCPCYCKNYFSTKEEAMEHAKIKHKSAIYCGICDKYTQSPEALKIHKRSHSERRKQIDRNLICDKCAKSFASRTSLNDHTRSNCGQNPLYHCDICDKRFSTAGILKTHSLLHKDDTPYVCDKCGKAFKIQSQYKTHLRHKHSEDKPFKCELCPKQYPYRESLLTHMALHTGLKRYACTGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSQYIGMQKGLLLMGTKPSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -