Onob022757.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orthonevra nobilis
Gene Symbol
-
Assembly
GCA_963555765.1
Location
OY743227.1:56854883-56856943[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.001 0.11 13.5 2.8 2 23 118 139 117 139 0.97
2 10 0.06 6.9 7.9 2.9 1 23 219 242 219 242 0.92
3 10 1.7 1.9e+02 3.4 0.7 2 22 250 270 249 270 0.83
4 10 7.5e-07 8.6e-05 23.3 3.5 1 23 319 341 319 341 0.96
5 10 1.3e-07 1.5e-05 25.7 1.5 1 23 348 370 348 370 0.99
6 10 8.3e-08 9.4e-06 26.4 1.2 3 23 385 405 384 405 0.99
7 10 1.9e-06 0.00022 22.0 0.4 1 23 411 433 411 433 0.99
8 10 6.8e-07 7.7e-05 23.5 0.2 1 23 439 461 439 461 0.98
9 10 0.00034 0.039 15.0 4.0 1 23 465 487 465 487 0.98
10 10 0.013 1.5 10.0 0.1 2 19 492 509 491 512 0.94

Sequence Information

Coding Sequence
ATGGACAGGAACGAGGACGAGTGTTCAGGTGATGATGACCATGAATCCCAGAAATCAAAAGAAGATGAAGTAGATTCAATTAAAAGCTCTCCGGGtggaaatgaagaaataatttcCAGGACACGAAGTGGGACGCGCCGAATACCTTTACGCCGagTTAGAAAGAAAAGAGGGCTCACGGCAAAATCTAAGCAATTAGTAAAGGCTAAAAAGCCAAGACAGGTTGTGAAAGATCTCTTCCAAAAGACAGAAGAGGTAAACAACATAGAAGCAGCGCAAGTTAAAGAGGAACTTGATATAAAGTCCGATATCGAAGAGGATGAATGCATACCGAATGGATGCAAATCGATTGAATGCTTCATATGCGGATGTAGGTTAAGTAAAATCTATAATCTGCGACATCACATGGCAACACACACGGAGGAGGGGTCATTCGATATGGAAGTCTTTGAAAATTCGGAAATCTTCAATATTCTCAATCCACACAAGAGGAACATCGACTCTAACATTATTAAGAATTTCGTGATTCAGgaAATCAAAGCAAAGCGATATTCCCAGTTCTACTGTATTCTTACCGAAGCGGCCGTTGAATTACACATCAGTGATTCGGAAACAGATTCCGATGGAGCCGGCGAGCTCATCCCCCATAACAACTACCGCTGTcagctgtgtaaaaaaaactttgaccgCCGCTATAAAGCACTTTTCCATCAAAAGACTGCACACGTGAAAACGGAACTCGCCGTCGAATGTGACTACTGCCTTAAGAAGTTCGTATGCATGAATCTGCTGATTTATCATTTGAAAACACAGTGTGAAAGCGACGAGAAACCAGTGCCTTGTACAGAACGATTTATGAAATTCCTTCTCAAAGCCAATCTCGATTACTACGCTAATTTGGCTCAGGCAAGAGAAGAAAGAAAGCTCCGCAAGCAGACCGAAATCCCCAAAACATACACCTGCAACACATGCAACAAGACATTTACCCGCCAGGAGCACCTCAATCGGCACAGTGCTGTTCACTTGCCCGACGAGATGAAGTTTGAGTGTCCTGTTTGCGAGAGGCGCTTCAATCGAAAGGACAATATGCGCTCGCACATGAAAACCCACACTGAAGAAGGAGCCCGCAGTGCAGAGTCACGAAAAATCCTTTGCTCCTACTGTGGACGCAGCTTTAGCAGTAAATCCAATTACGTTGTGCACATGCGTCGCCATACAGGTGAGAAGCCATACAAATGTGATGTCTGCGGTAAGGGATTTCCCAAGTCGACCGATTTGAATTCGCACAAAATCACGCATACGGGAGAAAAGAATTTCGTGTGCACGGTTTGCAATAAGGCATTCGCTAGGTCAGCTGTGCTGTCCAAGCACATGCGAGTGCACACCGGCCCGTTTACATGTACATGCTGTTCGAAAACATTCACAAAACAAATCGCCTTGACCGTACATCTGCGAACGCACACCAGCGGGCTGGTCTGCTTTGTGTGCAACGAATCTTTTAAAACAGATCAAGAGCTGCAGGAACATTTTGTAGCAACAGGCCATGACGAGGATAAACCTCTAAAAGTGATAAAAGAGTctccgccaccaccaccagtgAAAACGCCTAAGCCTCGTGAAGAGAACCCAGTGTCTGCAGTGGATATCGACTCGAATGATGATCCATTGGAGATTAAAGACGAAGAATGGCGCACGACGAAGGTTAAAGTACCTGTCAACGAGGCTATTCAAAACGTCTTGCTGAAATCCGTCAACACAGTGAACACTAATGAGGTTGAAAACTCAAATAATCCATCGGAAGAGGAGGCAACAATAAAGCCAGACACCGATGTAGCAGAATTTTCTCCTATTCGAACTGGCTTCGATGATGACTCGGAATACAACGATTGGTAG
Protein Sequence
MDRNEDECSGDDDHESQKSKEDEVDSIKSSPGGNEEIISRTRSGTRRIPLRRVRKKRGLTAKSKQLVKAKKPRQVVKDLFQKTEEVNNIEAAQVKEELDIKSDIEEDECIPNGCKSIECFICGCRLSKIYNLRHHMATHTEEGSFDMEVFENSEIFNILNPHKRNIDSNIIKNFVIQEIKAKRYSQFYCILTEAAVELHISDSETDSDGAGELIPHNNYRCQLCKKNFDRRYKALFHQKTAHVKTELAVECDYCLKKFVCMNLLIYHLKTQCESDEKPVPCTERFMKFLLKANLDYYANLAQAREERKLRKQTEIPKTYTCNTCNKTFTRQEHLNRHSAVHLPDEMKFECPVCERRFNRKDNMRSHMKTHTEEGARSAESRKILCSYCGRSFSSKSNYVVHMRRHTGEKPYKCDVCGKGFPKSTDLNSHKITHTGEKNFVCTVCNKAFARSAVLSKHMRVHTGPFTCTCCSKTFTKQIALTVHLRTHTSGLVCFVCNESFKTDQELQEHFVATGHDEDKPLKVIKESPPPPPVKTPKPREENPVSAVDIDSNDDPLEIKDEEWRTTKVKVPVNEAIQNVLLKSVNTVNTNEVENSNNPSEEEATIKPDTDVAEFSPIRTGFDDDSEYNDW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-