Onob019023.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- -
- Assembly
- GCA_963555765.1
- Location
- OY743226.1:83667919-83671422[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.51 58 5.0 1.1 1 11 19 29 19 30 0.93 2 13 0.032 3.7 8.8 0.8 1 23 330 353 330 353 0.93 3 13 0.14 16 6.7 4.0 1 23 362 384 362 384 0.98 4 13 2.4e-05 0.0027 18.6 3.2 1 23 390 412 390 412 0.98 5 13 3.5e-05 0.004 18.1 1.2 1 23 418 440 418 440 0.99 6 13 6.9e-06 0.00078 20.3 0.7 1 23 447 469 447 469 0.97 7 13 6.2e-05 0.0071 17.3 0.4 1 23 475 497 475 497 0.97 8 13 7.1e-05 0.0081 17.1 0.3 1 23 503 525 503 525 0.98 9 13 2.5e-05 0.0028 18.6 0.5 1 23 531 554 531 554 0.95 10 13 4.6e-05 0.0053 17.7 3.1 1 23 560 583 560 583 0.97 11 13 1.2e-05 0.0013 19.6 3.3 1 23 589 611 589 611 0.98 12 13 0.00033 0.037 15.0 0.4 1 23 617 639 617 639 0.96 13 13 0.00085 0.097 13.7 0.9 1 22 645 666 645 669 0.92
Sequence Information
- Coding Sequence
- ATGACTGAAACTATCCAACTAAGAGCGAATTACACGACAGAATTCCCAGAAATATTTAAGTGCTTCCTCTGCAATAAAACATTCGCAGAAGGTGATGAGCCGTGGCCTTTGTTTGAGAAAAGGTTTCTTGAAGATGGTCAAACCGATTGTGCCCTGTCAACGATACTGGCATCTGCACTAGACAGGGAATTACAGCCGGATTCTGTACACTCCAAGTTAGTCTGTGATGATTGCAATTTGGTCCTTTTGGAATACGAGAGCATTGAAAAGAGGTTCTATCAGTTTagattaaaaattctttcggaTTACAATAGCACGGCCAAGGCGAATGGTttatgtcccgtttggtttgaGATTGCCGAAATCGAAGAATGTGCACAGATTCCGGCGGCGGAGCCTGAAGAGGCTGAAGCCATCTTGACTGTGGAGGAGATAAAAACCGAATATGAAACTGAGAAAAATATTGTGCAGAGTTTGCCAGCGCTGGACGACCAGAAGTTTCCTAGTTTCGTAGAAGAAGATGAACATGAGCGGTATCAGGGCGATATTGTTCATGAATTCAACACGGAAACGGCTGCTGTGATTACTACCGATGGACACCAAGAAGAAACCCAAACAGGCGAGTTCGCTGACAGGAATATTCAGGTCATTACAGAGGagattcCATACGAGCAAATCATTGAGCAGAACTCCATCATAAGTTACGAAAACAGTGTAGAAGATGCAACTGAATCTGTGATCGATTACAACAGCAGTAATTGTGACAAATCTCAACTACTCTCGGAAGATATTGCATCCTCTCCGAAGCAGCCCCTGAGGCAAAAACGCTCAGCACGAGTCATAAAACGAGAACACCAACGAGCAGGTGACAATCTTACCTTTGAACTCACTGACAACATGTACATTTGCGGTTTATGTCCTGAGAAATCCGAATTCGATCCGATGCTCTTTTCGAATCATCTGAAAACCGTTCACAATTACAAATTCTATGTGTGCGACATGTGCTTTAAGGGATTCCATAAGCGAAACGAAGTCAGCGAGCACATGGACGAAGTGCACAATGGGGGCACTGAAGAAGGAGAATTCCAGTGTGAAACCTGTTTGCGAGTTTTCCTCAACCACAGACTGTTTCGCATCCACAAACGAATGCACACATCGACCAAACAACACGAATGCCCAGAATGCCACAAGAAGTACAGTTCGAAGAATCTGCTCGACGAGCACATGAATATGCATACTGGGAAGCGCCCGTACAAGTGTATGTCTTGCAGCAAGGACTTTGCTTCGAAATATACTCTTCAAGCCCATTTGAAGATCCACACGAAACGACCAAGACCTTATAGCTGCGATGAATGCGATAAGTCATTCATGAATGCACAGAACCTCGTGCAGCATAAGAAGTTGCATTCCGGTCAAAAGTCTTTCGTTTGTGATGTTTGCCAAAAAGCGTTCGGAACGCAGCACAACTTGGACGTGCACAAGATCGTGCACTCGGGAAACAAACCTTTTATATGCCGAACGTGTGGGAAGGGCTTTGCGCGCCGAGCTGAGATTAGAGATCATGAGCGGACGCACACGGGTGAGAGGCCGTTCAAATGTGATATGTGTGAAATAGCCTTTGCGCAGCGGTCGAACCTAATGACGCACAAGAAAGCAACTCATTTGAATGACAAGAAGCACAAGTGTGAGCTTTGTGATCGGTCCTTTAAAAGACGACGTCTCCTTGAATACCACACTCAGTCCGCTCACACAGGAGAACGCCCGCATAAATGCGAGGTATGCAGCGCTTCTTTCGTCTATCCCGAACACTTCAAGAAGCACATGCGCATTCATAGTGGTGTCAAGCCGTACGCATGCGAGGTTTGCGGGAAGCTCTTCAATAGCAGAGACAACCGAAACGCACACAGATTCATTCACAGCGAGAAGAAGCCATACGAGTGTCTGGAGTGTGGCATGGGATTTATGCGAAAGCCGTTGCTTCTGTCACACATGAAGCACACCAAGCATGTGAATGATACAATTATCGTGAATCAACCGCAGATAAGCCACAGAGGAGTAGAAGATGGGGACAAAGAACTGACGGATGAGGATCTTCATCTGAATAACCGGAACATATCGGAAATCATTGTGGATGGTTCGCCTTACGATGAGGTTATAACATCCGATACGATCCTAGTGGAGGACGGTGATGGGCAATACATTAAGGATGAAGATGGTGAGGTGAAATATTTACAGTTTACCGAAATGCATAGAGATGGGCAGGCGACGTTTACATGGGTGGACATCGGAGACGATCAGGATGATGAACATTAG
- Protein Sequence
- MTETIQLRANYTTEFPEIFKCFLCNKTFAEGDEPWPLFEKRFLEDGQTDCALSTILASALDRELQPDSVHSKLVCDDCNLVLLEYESIEKRFYQFRLKILSDYNSTAKANGLCPVWFEIAEIEECAQIPAAEPEEAEAILTVEEIKTEYETEKNIVQSLPALDDQKFPSFVEEDEHERYQGDIVHEFNTETAAVITTDGHQEETQTGEFADRNIQVITEEIPYEQIIEQNSIISYENSVEDATESVIDYNSSNCDKSQLLSEDIASSPKQPLRQKRSARVIKREHQRAGDNLTFELTDNMYICGLCPEKSEFDPMLFSNHLKTVHNYKFYVCDMCFKGFHKRNEVSEHMDEVHNGGTEEGEFQCETCLRVFLNHRLFRIHKRMHTSTKQHECPECHKKYSSKNLLDEHMNMHTGKRPYKCMSCSKDFASKYTLQAHLKIHTKRPRPYSCDECDKSFMNAQNLVQHKKLHSGQKSFVCDVCQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFKCDMCEIAFAQRSNLMTHKKATHLNDKKHKCELCDRSFKRRRLLEYHTQSAHTGERPHKCEVCSASFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLSHMKHTKHVNDTIIVNQPQISHRGVEDGDKELTDEDLHLNNRNISEIIVDGSPYDEVITSDTILVEDGDGQYIKDEDGEVKYLQFTEMHRDGQATFTWVDIGDDQDDEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -