Onob023319.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- -
- Assembly
- GCA_963555765.1
- Location
- OY743227.1:68280295-68288170[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.6 7.5e+02 1.5 0.1 2 16 71 85 70 87 0.83 2 13 0.015 1.7 9.8 2.3 2 23 231 253 231 253 0.96 3 13 0.56 63 4.9 2.9 1 11 258 268 258 283 0.65 4 13 9.3e-06 0.0011 19.9 7.1 1 23 287 309 287 309 0.99 5 13 5.4e-08 6.2e-06 26.9 0.2 1 23 315 337 315 337 0.98 6 13 9.3e-07 0.00011 23.0 1.9 1 23 343 365 343 365 0.98 7 13 3.8e-05 0.0044 18.0 3.9 1 23 371 393 371 393 0.97 8 13 0.0023 0.26 12.4 2.3 1 23 399 422 399 422 0.98 9 13 0.00015 0.017 16.1 0.7 1 23 434 456 434 456 0.97 10 13 8.5e-05 0.0097 16.9 0.8 1 23 463 486 463 486 0.90 11 13 1.2e-05 0.0014 19.5 1.1 1 23 492 514 492 514 0.95 12 13 0.0015 0.18 12.9 1.5 1 23 520 542 520 542 0.87 13 13 0.00039 0.044 14.8 1.0 1 23 548 570 548 570 0.97
Sequence Information
- Coding Sequence
- ATGTCGCATGAAGTGTGGCTGGATGAAATCTCGTTTTTAGAGAAAACGTGCCGAGCCTGCAGTCGATACGATCCAAATGATTCCATGACATTTCATGCAATTTTCAATGGTGGCCCTACAGGAGAGGCCACTGCTGAACTGGCAGGCGTGTTAGAAGAGTTTGTCCTATGGAATCTCGACATAAAGTTCAAGGATGGCTTGCCCCAACAGATGTGCAGTGAGTGCGTCGAAAGGTTTGTCCAAGTGAAGAGCTTTCGCGAAGAAGTATTAGATACACAACGATTGCTGGCTTCGTACCGTCGAGGTGGTACAAATGATCCCGAAAAACAAGGTGCAATAATCCAAATAGAAGCACTGCAAACTGCGGCCGATGGTGTTGACCGTGTGGGTTACATTTCGCCAAGCAAATTGATTGAGTACGTAGGCTATGATGATGACAACGAAGATGAGGAGAATCCAAGTTTGGCCAAACGAACGCAAGATGTAGATTACTTCTTTGAAGAATACGAGAGTGATTTTCTATTCAACCATCCGAATCAGATGGGCACGAATGatatattgaaattcaaaaaaccaGAAAGTCCGAAAGCAAGTGAATTCAAATCGAGTAGCAGCAAGAATTTTGAGGAGAATGCATTGGTGAATGAAGACAAAGTCGAAGAGCCTAAATCTTCTGAGGGAGGCAATGCGAAATGTGATATTTGTTTGAAGGGTTTCCGCTCGGCCTTGCATGTATTGCGGCACAAGCGTCAGTTCCATGTTCGTGCCAACTTCGAGTGTCCAGATTGTGGAGCAAAGTTTGAAAAAGTCACGCAACGGACGTTTGACTATCATTTGAGATCTCATCATGCCAAGCGGTACAAGTGCTCGTACTGTGATAAAAGTTTCCATCAAAAGATTCACATGATAAATCATCAGAGGACGCACACCAACGAGAGACCTTTTGTCTGTGCAATTTGTGGAAAATcttttcgGCAAAATACAAATCTGCAAGAACACTTGATGATACACAAAAATATCCATCCATACAAATGTGAAATTTGTGGCAAAGGCTTTTCACACCGTTCCAGTATTCGTATGCACTTACGGCTCCATACTGACTATAAACCACACCAGTGCGAGATTTGTGGCAAAACTTTCATTCAAAAGGCTCACTTCGATCAGCATTCAATGAAACACTCTGGCATCAAGCCATTCAAGTGTGAATTCTGTTTGAAAACGTTTCGTATTGCATGCCAACTGGGGAATCACATGCAATCGGTGCACTTCCGCAATCCAGATAAGATGCGCGATGGTATTTATAAGTGTTCGCAGTGCGATCAAGAATTTAGCAACGGAAGGGATCTCATTCAGCATAAGAAGGCCCATGACAATGGAGAGCGTAAGTTCCTTTGCCCGCATTGTGGTGCTGGCTTCAAGAGGGAAACAACCTTGAATCACCACATTGATGCGGTGCACCTGAAGAAGAAACCCTACAATTGTATCTATTGCAACAAAACCTTTGCGCAGTTGTCCAATTTGAGTGAACATCTGAAAACGCACAAGGATTCCAAGCAATACAAATGCAGTTACTGTGATAAAACATTCACACTGAGGAAGACTAAAGTAATGCACGAAGCGATTCACACTGGTGAGAAGCGTTTCAAGTGCAATTTCTGTGATGAATCCTTTGTGTATCGGCAAACCCTTGGCTctcatGTTATGAATCATTTCCGCGACGAGAATGAAGAGGAGTACGAAATAaacgaagaaaatatcgcagacGATGATTTTCTGAACTACGATAGCCAAAACTTGGGCGACCAAGATGAATTTGGACTCGATGTATGCAAACAACTACTTGAAGAAGACAAAATCTAA
- Protein Sequence
- MSHEVWLDEISFLEKTCRACSRYDPNDSMTFHAIFNGGPTGEATAELAGVLEEFVLWNLDIKFKDGLPQQMCSECVERFVQVKSFREEVLDTQRLLASYRRGGTNDPEKQGAIIQIEALQTAADGVDRVGYISPSKLIEYVGYDDDNEDEENPSLAKRTQDVDYFFEEYESDFLFNHPNQMGTNDILKFKKPESPKASEFKSSSSKNFEENALVNEDKVEEPKSSEGGNAKCDICLKGFRSALHVLRHKRQFHVRANFECPDCGAKFEKVTQRTFDYHLRSHHAKRYKCSYCDKSFHQKIHMINHQRTHTNERPFVCAICGKSFRQNTNLQEHLMIHKNIHPYKCEICGKGFSHRSSIRMHLRLHTDYKPHQCEICGKTFIQKAHFDQHSMKHSGIKPFKCEFCLKTFRIACQLGNHMQSVHFRNPDKMRDGIYKCSQCDQEFSNGRDLIQHKKAHDNGERKFLCPHCGAGFKRETTLNHHIDAVHLKKKPYNCIYCNKTFAQLSNLSEHLKTHKDSKQYKCSYCDKTFTLRKTKVMHEAIHTGEKRFKCNFCDESFVYRQTLGSHVMNHFRDENEEEYEINEENIADDDFLNYDSQNLGDQDEFGLDVCKQLLEEDKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -