Onob016704.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- -
- Assembly
- GCA_963555765.1
- Location
- OY743226.1:47404824-47411806[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.32 37 5.6 0.4 3 23 172 193 170 193 0.94 2 19 0.028 3.2 8.9 5.5 2 19 236 253 235 256 0.92 3 19 5 5.7e+02 1.9 6.2 2 23 267 288 266 293 0.90 4 19 0.0029 0.33 12.1 0.1 3 23 297 318 296 318 0.95 5 19 0.0018 0.21 12.7 2.9 2 23 325 346 324 346 0.96 6 19 0.0038 0.43 11.7 4.3 1 23 352 374 352 375 0.96 7 19 3.1e-05 0.0035 18.3 4.6 1 23 381 404 381 404 0.97 8 19 0.36 41 5.5 0.0 1 20 413 432 413 433 0.92 9 19 0.00065 0.074 14.1 0.4 1 23 451 473 451 473 0.97 10 19 0.015 1.7 9.8 0.4 1 23 478 500 478 500 0.99 11 19 0.29 33 5.8 0.7 1 23 516 540 516 540 0.96 12 19 1.6e-07 1.8e-05 25.5 1.2 1 23 546 568 546 568 0.97 13 19 0.0042 0.47 11.6 0.5 1 23 574 597 574 597 0.97 14 19 0.0006 0.069 14.2 0.4 2 23 603 625 602 625 0.97 15 19 2.2e-05 0.0025 18.7 0.7 2 23 629 651 628 651 0.97 16 19 1.7e-05 0.002 19.1 1.1 1 23 657 680 657 680 0.97 17 19 0.0024 0.28 12.3 0.9 1 23 686 708 686 708 0.98 18 19 0.00016 0.019 16.0 3.6 1 23 714 736 714 736 0.98 19 19 0.013 1.4 10.0 0.1 1 23 742 767 742 767 0.91
Sequence Information
- Coding Sequence
- ATGGATATTACTTGTTTGAGATGCATGAGCCAATTGCATCAAAATTTTCATCTGGTATTTGATGAAACGGGCGTCGAATTACAGCTGGACAAACTTTTGGCCGATCATTTCGAAATCTTCGTGGAGGAGGACAATGAAATAGTCCAGGCACTTTGTGAGGAATGCGTAAATAAACTCATCGAACTGTATGATTTGACGCAGAAGAACCAGGAACAGCAGCGTCAGCCCGAAAATGAGTACATGGAAGAAACGGAATTGGACATTAAAGAGGAAATGGGATCCGTGAGTGATGAAATGGAACTGGATACCGAGTCGGGTAAGAATGAAATTGCTGATAGCTCAATTCATGAGGATGACAATTTTTTGGGATTCAATGATAATACACACGAATATGTGcaaagtttggaaaatgttCAGTTTATTGAGGAACTCGGCGGCATGACTATCGCTGAGTACGTTAAACAAGTCGTCAAAAGCGAATTGGAGGAGATTGACTTCAACCAAAATACTATTTgcaaaTTGTGTGATGAAGTTCTAACAAGTCACACTGCAGTTCTTATGCACGTATCAACTACGCACGaaactgaaacaaaacaatatccatgTATAAGCTGTGATAGGAGTGATTATTTTAACTCTGTTAAGGATCTTGCACACCACATAGTCTTGAAACACTATGATCTCGACACTATCAACATTTACTGTACATGTCCCGAGTGTACGAAAAGATTTTCGTCGTTTGTTGAATTCAACAAACATTCATGCTACAAAGAGAAAGTCGGAAGTCGATTGATTCAGGAGTGCGATACCTGCTCAAAGCACTTTTCGTCTAATAAAAGgTACCGCTTTCACTTGCAATTCCATCTGGAGAAACATCGGGCCAAAGCATGCTTCATCTGTGATATTATGTTTTCTGATGAGAACGATTTTTTTGAACACATAATGTACGCCCACGAGAAAAGGGATTCCTTAATTTGTAAAAAGTGCGATCGGGTGTGCTCTTCAAAGACACTATACGACAGCCACATGAAGCTGCACAAGGCTATTCGCTCATTCCAATGTGATTACTGTTCGAAAACGTATCTATACAAGCAAATGCTCATGAACCATATTCAACGACATCATAGTGGAAAGCAACTTCATAAATGCAAAATTTGTGAGAAATCTCTTGCCAGCAAGCACCTCCTCAAAAGACATATGCAAGTGAAGCACAATGAAGACACAGAAGCgaatatgtttgtttgttcaGTGTGCGGTCTGGTTGGAGCAACAAAAGAGGATGCAGagGAACATATTGCAGATATTATCTGCAATGATGCAGATTTAGTTAGTGAGCAGCTGAAGATAGCATATGCTTGTGAATTTTGTGAGAACGCTTTTAACAATGTTGAGAATTTGAAGAAGCATCGCAGTATTCATTCGGGCGACAAATACACTTGCTGGATATGCGCTAGTGTTTATTCGGAATTCAAGAAGCTAAAAACGCACATCATAACGCACGATAAGTACAATTCGATTCAGGAAACATTCCCGGTCAATAGACATTATGTTTGCAATTTCGAGACTTGTAGCCAATCTTATTTAACGTGGCCCTCACTTCGTGCTCACAAGTTTCGACATGAAGCCGATGCCAAGTTTTCATGCGAAATTTGCAATCAAACATTTCGGACACAATCGAATCTAAACAATCACCTGAAGGCACACGACAATAACGAGCAATATCCTTGTCAGTTCTGTTCAAAAATGTGTGTCTCCGCAATGGCTTTAGCCGTTCACATCTCACGAAGGCACAATAACAATTGTAAGACTTGTCCGACTTGCAAGTCCACATACCCGACCGAAGAAACATTGGAGGAACACATCCGAACAAACCACATAGAGTTGAAATGCCAACAGTGCGGTAAGGAAACAAAGAGCAAACGGAATCTAGACGTGCACATACGAATGGTCCATGCAAaagttaaaagatatttttgttcaacttgTGACAAAGGTTACTACAATAAAAGTGATTTAAAGGTTCACGAGAAAACGGCACATTCGGAGTTGCACAAATATAAGTGCGAGCAATGCGACTTCAGCTCAAGCTATGAGGTGTCGTTTAAAGCTCATGTTTTGAAGCATGGAGCTGAGAAGCCATTTAAATGTGAAGAATGTGCTCGGGAGTTCACGAGGAAAGCATGCTTTAAACTGCATATGCTTAGGCATACCGATGTAAAGCCGTTTGAATGTCCCGTGGAAGGATGTGGAAGGAGCTTCGTTACAAGAGGTATTCGTAACACACATTTACGTGAAAATCATCCAGGATGGGTAATTTCATCAAGTCCAACGAAAACAACCCCGCAAGAAGGTATCCAATCATCGACGTCGACTGATTATGTCATCTCGGATTTGGCTGCAGATGATGAACCGTTGCAAATGGAAGCGGAAGAACAAGATCTTGTGCTTTTCGAGGACTCAAATATTAACCAAGATATTGTTCTGGAATATGTCGGTAGTAGAAGTGACTTGGTTCTTCTAAATCATTCAGAAGGCGGGTACAATATACCTGATTAG
- Protein Sequence
- MDITCLRCMSQLHQNFHLVFDETGVELQLDKLLADHFEIFVEEDNEIVQALCEECVNKLIELYDLTQKNQEQQRQPENEYMEETELDIKEEMGSVSDEMELDTESGKNEIADSSIHEDDNFLGFNDNTHEYVQSLENVQFIEELGGMTIAEYVKQVVKSELEEIDFNQNTICKLCDEVLTSHTAVLMHVSTTHETETKQYPCISCDRSDYFNSVKDLAHHIVLKHYDLDTINIYCTCPECTKRFSSFVEFNKHSCYKEKVGSRLIQECDTCSKHFSSNKRYRFHLQFHLEKHRAKACFICDIMFSDENDFFEHIMYAHEKRDSLICKKCDRVCSSKTLYDSHMKLHKAIRSFQCDYCSKTYLYKQMLMNHIQRHHSGKQLHKCKICEKSLASKHLLKRHMQVKHNEDTEANMFVCSVCGLVGATKEDAEEHIADIICNDADLVSEQLKIAYACEFCENAFNNVENLKKHRSIHSGDKYTCWICASVYSEFKKLKTHIITHDKYNSIQETFPVNRHYVCNFETCSQSYLTWPSLRAHKFRHEADAKFSCEICNQTFRTQSNLNNHLKAHDNNEQYPCQFCSKMCVSAMALAVHISRRHNNNCKTCPTCKSTYPTEETLEEHIRTNHIELKCQQCGKETKSKRNLDVHIRMVHAKVKRYFCSTCDKGYYNKSDLKVHEKTAHSELHKYKCEQCDFSSSYEVSFKAHVLKHGAEKPFKCEECAREFTRKACFKLHMLRHTDVKPFECPVEGCGRSFVTRGIRNTHLRENHPGWVISSSPTKTTPQEGIQSSTSTDYVISDLAADDEPLQMEAEEQDLVLFEDSNINQDIVLEYVGSRSDLVLLNHSEGGYNIPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -