Onob022647.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- -
- Assembly
- GCA_963555765.1
- Location
- OY743227.1:54904186-54906454[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.2e-12 8.9e-09 35.5 0.0 6 42 14 50 11 52 0.95 2 2 7.7 7.4e+03 -2.7 0.0 19 26 301 308 300 309 0.82
Sequence Information
- Coding Sequence
- ATGCCACGCtcgataaaaaaatacgatGAGGTATCCGTCGCAGCTGCATTGAAAGAAATTAGAAGCAACGCCATGGGATTACGTAAAGCGAGTAGAGAGTTCGGAGTGCCAATCACAACTCTTCATGATAGGATAAAAGGCAAAGTCCAGGATGAAGTAAAAAGGAAAGGACCTGCAACTGTACTTACAGAAGAGGAAGAAAAGAAGATAGTAGACTGGCTTCTTAATACAGCGAAATGTGGTTTTCCACAAAAACCGAATGAACTTTTGGACGTTgctcaaaatattattcttgaTGACAAACGAAAAACACCGTTTAAAAACGGAAGACCAGGAAAAAAATTGAACCTAACTGAATTTTTGGAAGAGGAAAGCTGTACAGACATTCTGTTAGACCCGACAAGAATTTTCATCGGAGATGAAACATCTTTCAGCTTAGCTCCAAAGACTGGAGCGGTGATTGGTCCGAAAGGCTTAAGAAATCTTTACCAGGTGAAACTCTCGAACGAAAAAGACAACATTACGGTGCTCTTGGTGTTTTCTGGAAACTGTGAAATATTACCTCCAGTGGTAGTGCTCCCATACCTTCGTCCTCCAGCTCAAGTTGTAAGATCCGTACCTCCAGATTGGGTAATTGGTCGCTCTGAAACAGGATGGATGCGATCTGACACCGTTTACGAGAAGCGCGGGATTTATCCCTTTGACCCTAACGCTGTCGACTACACAAAATGTGTCCAGAATTATTTAGAACGTGTAAACCAACAAGAGGTGGAAGGAATATCTGCTGACGGCATTGATTTGTCTGCAAGTGCATTAGCAATTACAGAAAAAACGTTACTTCGACTTCAAACCGACGCAAACCTTCGTGATTACATTCATTTCGAAGAAGTTCTCGAAACTGTTTCGAAAGCAGCGAAGAGTTTTGAGCCGATCGCAGAGCCTGATCCTTATGATATAGCCCCGTCAACATCCGGAATCACTAGACCAAATGCTAACATACAACAGGAAAATACCTTGGGTCCAACTGACGGATTGTTCCGTAATAATGTTTCAATAGCAGAATCTATAGGATCTAATCAATTAGATGAGGCAATAACGCAAATACTGGAATGTGATGACATAGacAAAATTGATATCTCATTGTGGAATGGTTCGTTCGGTAGTCAGAATACAGTTTTAAGGGAGTTAAATCGTTCTACTCCAAACAGAACAACAGCTAACAACCAAAAAGCAATATCTGCTGGCACCTCCTCCGCTAAAATTGACAGAACACCCGTTTCCAGGTTCAGAGTTTCACCGAGCAATAAAATGTCACCCTTTGATAAACACTTAAAGTACCCGGAAGCTATATGTACTAAACGAGGAACCCGAGTTCTTCCGGAAAATAGACCACCCATGTCGATTTCTTCCTCAAAGTGGATGGAATTCCATAATAACATAGCTGAAGCTAAAGAACGGAAGAGGAAAAACATCGatgaaaagaaaagactgaGGATAAGAAATAAAgctaataaatcaaaaagtaCAGCTGCTAAAACAAGAATCGATAAAAAACTACCCAAAAAACTAAAATGCGGTGCATGTGAAGATGATTTAAACACAGATACAGAAGACAATGAACTCAAACATATTGGCTGTGATACGTGCAATCGGTGGTATGACTTAAATTGCAccaaactgagtacaaaaagCTTTGAAGATGCTCAAAATCAAGAATTTGTTTGCACTTTTTGTTCATAA
- Protein Sequence
- MPRSIKKYDEVSVAAALKEIRSNAMGLRKASREFGVPITTLHDRIKGKVQDEVKRKGPATVLTEEEEKKIVDWLLNTAKCGFPQKPNELLDVAQNIILDDKRKTPFKNGRPGKKLNLTEFLEEESCTDILLDPTRIFIGDETSFSLAPKTGAVIGPKGLRNLYQVKLSNEKDNITVLLVFSGNCEILPPVVVLPYLRPPAQVVRSVPPDWVIGRSETGWMRSDTVYEKRGIYPFDPNAVDYTKCVQNYLERVNQQEVEGISADGIDLSASALAITEKTLLRLQTDANLRDYIHFEEVLETVSKAAKSFEPIAEPDPYDIAPSTSGITRPNANIQQENTLGPTDGLFRNNVSIAESIGSNQLDEAITQILECDDIDKIDISLWNGSFGSQNTVLRELNRSTPNRTTANNQKAISAGTSSAKIDRTPVSRFRVSPSNKMSPFDKHLKYPEAICTKRGTRVLPENRPPMSISSSKWMEFHNNIAEAKERKRKNIDEKKRLRIRNKANKSKSTAAKTRIDKKLPKKLKCGACEDDLNTDTEDNELKHIGCDTCNRWYDLNCTKLSTKSFEDAQNQEFVCTFCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -