Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 6.5e-12 6.2e-09 36.0 0.0 4 42 103 142 100 144 0.87

2 3 0.31 2.9e+02 1.8 0.0 28 37 174 183 170 189 0.83

3 3 2.1e-09 2.1e-06 27.9 0.0 3 39 212 248 210 254 0.84

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	6.5e-12	6.2e-09	36.0	4	42	103	142	100	144	0.87
2	3	0.31	2.9e+02	1.8	28	37	174	183	170	189	0.83
3	3	2.1e-09	2.1e-06	27.9	3	39	212	248	210	254	0.84

Coding Sequence: ATGCCACCGACCTATGCCCAATTGGTAGAAGAGCTTCCTGCTACGACTGAGGAATACATCATTTATGAGCTGAAGACTGACACAGAACCTATGTACAACTTTATCATAAAACACGCAAAGAAACCACCAGACGAGGACCAGCCTAGTTCAGAGTACTCCTCTAACACTACTTACACGCAAACAGATGATGCCAGCCAAATCGACACTGATCCCAGTGTTACGACAAGTGTACAAATCCAAGTCGAGGCTGACGACGATGAGGCGAAAGAGAACTCACCAAAATCTCGAAGGGCTGCGAACCGCAAACGACTTATGGAAGCTTTGGAGTCTGTTGTCAATCAGAAAATGACCATATCTAAGGCTGCCAGTGTATTTCGAGTGACGAAGAGCACCCTTTGGAAGGAAGTGAACAAGCACACGAATCACCGGCGAAAAAAGGTCGATCAGGACATGGTCGACGAGATTACCCATCGAATATGTGCTGGAGAAGCCCTGTCGGAAATTTCCAGATCATTGAAGGTGCCAAAGTCAACCCTGCATCTGCATAAAGTTCGATTGGCGCAGAGGGGCCAACTGCCTTCAAGCGTTAAGCTCAAACAGGCGAGGTCATCCACGGAGAAGCTTGCAATGCATGAGCGAATCATACAAGCATCTCGGGGCTGTCGAGTGAATGGCATGTCAATACGCTTCGCAGCCAAATTCTACTCAATACCTTTGTCTACTTTGTGGAACCACATGCGACGTTTTAGAGCTGCCCAACAGAAATTGACCAATGAAGCTAGACAAACTGGTGATTGGAATGATTCGGCGAAGGACGACGAGTGCAAGGAAAATGTTCTAGACGACGTGGCAGTTTGTAACGAGGAGATGGATTTGGATAACTTCGATGTGGATGCCTATTGCGAACGACAAGAAGCGGCCAGTGAAGATGGAGACTTTTTAATAAGCTTTGACTTTGAAACTTTCGAGGAGTTTGTCAAAagagaaattgaagaaaatacttaa
Protein Sequence: MPPTYAQLVEELPATTEEYIIYELKTDTEPMYNFIIKHAKKPPDEDQPSSEYSSNTTYTQTDDASQIDTDPSVTTSVQIQVEADDDEAKENSPKSRRAANRKRLMEALESVVNQKMTISKAASVFRVTKSTLWKEVNKHTNHRRKKVDQDMVDEITHRICAGEALSEISRSLKVPKSTLHLHKVRLAQRGQLPSSVKLKQARSSTEKLAMHERIIQASRGCRVNGMSIRFAAKFYSIPLSTLWNHMRRFRAAQQKLTNEARQTGDWNDSAKDDECKENVLDDVAVCNEEMDLDNFDVDAYCERQEAASEDGDFLISFDFETFEEFVKREIEENT

Sequence clustering based on sequence similarity using MMseqs2