Onob014217.1
Basic Information
- Insect
- Orthonevra nobilis
- Gene Symbol
- br
- Assembly
- GCA_963555765.1
- Location
- OY743225.1:130392429-130393861[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-13 1.8e-10 41.0 0.0 3 43 289 329 287 331 0.91 2 3 0.017 16 5.9 0.0 27 37 360 370 351 376 0.86 3 3 1.9e-16 1.8e-13 50.5 0.0 3 41 398 436 396 438 0.93
Sequence Information
- Coding Sequence
- ATGAACCACCTCAAATGGATGGGCCATACGGCTACCATCCTTGATATTCAGAAGGCTCTCAAGAATGATCCAGCCACCTGTGACATTACCCTTGCCTGTCGAGGCAAATCGGTGAAGGCTCATCGTTTTGTTCTGTCTTCGTGTAGTGATCTGCTGCATGATTTATTGAGCGATGTGCCTGCTAACCAGGAAGCCACCATAATAGTGCCCGATGTAAAGGGTAACCTTCTGGATTGTGTCTTGAGTTTCGTGTATATGGGGGAGACTAGCTTGTCGTCGACCAATTTATCCGAATTTTTGGAGGCCATAAGCATACTTGGAATAAAGAGTGCTATAAGCTTTGAATGTGCGAACAGCAGTTCAGCAAATAATAGTAAAAATGTTACCGTTGTCACGGAAATGGAAGAGGAATTTGCGGAAGCCGAACCGGAGCAAGAAATCGTAGAAAAGGATGATGAGGAGGAACAAGCAATTGTAGAGAACAGCAGCGTTCGCGAGCTTGAATTTCTTGAAGTCTACAATGAACAAGAGAAAATCAGTTACACTATAGAAAATATAACGCCAAACAATCCCAACGAGTATATTCTTACAGAGAGCTCTGGCACGTTTACTTTAACaccaaattcgaaaatcgaAGGCGATGAAGTGGCGTCGCTGGTGGTAAAGCCCGAAGACGAAACCCAGATGATGGAACAGTATGTTGGTGACCCAATAGGAGACAGTAGTCAGTGTTCGAGTAGCAACGACATGAAAGAGGATAAATCTAGCAAGAAACTTAAAGATGAATTCAGTGAATTCCAAGCACTCAGTCCAGATGATTCTAAGGGATATCAAAGCTTCAACGAAACGCAGTCAGCCCGCGTCGAGGCGCTAGAGAATGCAGTCCTTGCTGTTGTCGATGAGGGAATAAGCCTTCAGAAGGCTGCCATTAAGTATAACATTTCTAAGACGGTTCTCTGGCGGCGAGTAAAAAAACATCCGCTATATATGAAGACAACGCGTGAGAATCCACTTATAACAGCGGCATGCGAACGTTTGAAGAATGGTGATTCTTTGAAAAGTATCAGTCAGGCGTTAGATATTCCAATGTCCACCTTGCATCGACACAAAGTGAGACTTGCGCACGAGGGTCGTTTGCCAGATTATGTGACGTTCAAAAAACGGGGTCCAATGTCGAAGGAAATGCTTAAAGAGAAGCTTACGAAAGCAGTCAGAGCATGTTTGGGCGATGGAATGTCACAAAATCATGCTGCAAATGTTTTTGATGTGCCAAAAAGCACATTGTGGCGgcatttgcaaaagaaaatgtatagaATAAGCGAGGGTGAGGTCAGCATCAAGGAAGAAATTGTTTTGCCATAG
- Protein Sequence
- MNHLKWMGHTATILDIQKALKNDPATCDITLACRGKSVKAHRFVLSSCSDLLHDLLSDVPANQEATIIVPDVKGNLLDCVLSFVYMGETSLSSTNLSEFLEAISILGIKSAISFECANSSSANNSKNVTVVTEMEEEFAEAEPEQEIVEKDDEEEQAIVENSSVRELEFLEVYNEQEKISYTIENITPNNPNEYILTESSGTFTLTPNSKIEGDEVASLVVKPEDETQMMEQYVGDPIGDSSQCSSSNDMKEDKSSKKLKDEFSEFQALSPDDSKGYQSFNETQSARVEALENAVLAVVDEGISLQKAAIKYNISKTVLWRRVKKHPLYMKTTRENPLITAACERLKNGDSLKSISQALDIPMSTLHRHKVRLAHEGRLPDYVTFKKRGPMSKEMLKEKLTKAVRACLGDGMSQNHAANVFDVPKSTLWRHLQKKMYRISEGEVSIKEEIVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_01116561;
- 80% Identity
- iTF_01116561;