Oale017584.1
Basic Information
- Insect
- Ornithoptera alexandrae
- Gene Symbol
- -
- Assembly
- GCA_029030555.1
- Location
- JARDVY010000181.1:120536-134343[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.089 8 7.7 0.6 1 20 289 308 289 310 0.92 2 13 0.15 13 7.0 6.0 2 23 331 352 330 353 0.94 3 13 4 3.6e+02 2.5 0.8 2 13 367 378 366 380 0.86 4 13 0.23 21 6.4 1.2 1 19 390 408 390 410 0.94 5 13 5.8 5.3e+02 2.0 1.5 3 23 448 470 448 470 0.80 6 13 0.00013 0.012 16.6 0.4 2 23 966 987 965 987 0.96 7 13 0.98 89 4.4 0.3 1 23 1006 1027 1006 1027 0.82 8 13 0.0062 0.56 11.3 1.5 3 23 1071 1091 1069 1091 0.94 9 13 6.4e-07 5.8e-05 23.9 3.2 1 23 1135 1157 1135 1157 0.99 10 13 0.67 60 4.9 0.0 1 23 1162 1184 1162 1184 0.95 11 13 0.0023 0.21 12.7 2.7 3 23 1191 1212 1189 1212 0.95 12 13 0.056 5.1 8.3 0.4 1 20 1217 1236 1217 1236 0.94 13 13 0.0027 0.24 12.5 1.9 3 23 1249 1270 1248 1270 0.95
Sequence Information
- Coding Sequence
- atgaatgagACACCAAAACGTAAATCTCGCAAGTCCAAGCTAGAGTTGCGCGAATGTTCCGATGACGAAGACGAAAATATCATGGCACTTCAGGCCGGCATAGACAAACTAGTAAATCTCAAGAAACACTTGCTGAAAGGCGGTAAGCATGAAGTGGAAGAAGCAACGGCTCCGGTTAACCCGATCAATTTCCATGTGCAAGTCAAAGTGGAGAAGTGTGTCGACGGTGATGATGAACAAAACGATTTCGTTGTCGCGGACGGCGCCTCCGCCGGtgctgatggtgatggtgaagCGGAATGCGAGAAAAGACCAGAAAAAAGTTCTACAAGTGTTGataaaatatttgaacaccACTACTACTTGAGGATATTACAGCCGTCCACCAAAGGGTCCATCATCCGCAGGATCAAGGAGTATGTATTCACCAAGAGCAGCCTACGCGCGGGTCTGGAGGCGCAGGCCAAACTGAACACCAGCCCCGCCGACAGGTACATTCAGATCGAATTGAACAACGTCCACTGCCAGATCTTGACACCGGCTAGACCTCGCCACGACGAGGTCATACAGAAATGCTTGCAGCAGTGGTTGAGCTGGTGCGAGTCCTGGCCCGAGGTCAGGGAAACGCCGCTGCTCTACAAATGTTACGTATGCAGCAAGGGCTGGTGGAGACTCCACCCGTTCAGGGAGCACATCAAGGAACACGACGACCCCCACCTCGAGATCAGAGCGGAGTCGCGCCAATACCAGTTCAACGTGGTCGCTTCGGTTAACAAGAGTGACGTGATGAAGGTGGTCAACGTGGACGGCGTCTGTCACAAGTGCGACAAACCCATAGAGTACCACGCTGGTAAAAACGCCAATTACCTTTGCACGGGATGCAAGTTGGAGGTCACCAGCTGTTCCAAGCTGAGGACCCATCAGGCCGTGTGCGTGAAATACATCGAAATGAAATTCAAGAAGCAGATCCAATCGTCCAAGGGTCTGATGGTCTGCAACCTGTGCGGAAGTCACTGCGTCACGGAGCGACACCTGCAGGAGCACCTCATCACCCATCACTCGCCGAGGAGCGACGACCTGACCTTAATACAGTACACGGTGTGCAAATACTGCAACATGAACTTCTTCAACCAAACCTACCACAACTGCCCGAGGAAGATCAAGTGTTACAAGTGCTCATACTGCTGCAGGAAGTTCTCGTCGCCCGCGATGCTCGATCTGCACAACGCGGTGTCCAGCAGCCGCACCTCCAAGTGCGAGGTGTGTGGGCATTCGATGAAGGATTGCATGATGCTGGAGCACATGCTCAGCCACACAAGGAACTACGGAGCGGTGTACTGGTGCCGGAAGTGCGACTACAACATCCTGTTCACTAAGTACACGATGCTGCTGAATCACATgagatttcataataaatatacaaacaaacgGAGGTTCACCTACAAGATGCTGCTCCCGACGACATGCATCAACGGCGAGTTCGCAGCATCCATGCGGACCATCGACATCTCGCAATCCAATGTTATGGACTTCCTATTGGGGAAACATTTGGAGTTTGGGAAACTTAAGGCCTATTATCCAATCAGTCGCTCGGGTAACGTTGATGATATAGATAAAGTGCCGGATATCCTCGTCGGGGACGATGGTGGCGTGGATGTTGTGGCTGCAGCAGGCGCCGCGAGAGCCGATCATTCGGATCATCTAGCGCTGCAACTGGACGCGGAAATACAGAGAGATCTAGAAATGGAGAAGGCGATATCCAAAGTCTTCAAAGCGTCTAGATGCTACAAGAAATTCTTGGAGAAGGAGTCGGCTGAACCCACCGACGATTATctctatgatgatgatcttatTATTCTAGAAAAGCCGGACGACGTTTTAATAATCATAGATTCCGATACGGACGATAGGAACGGTGATGAAGATGTTGCGGATGCTGAAGACGGCAGAATGAATGAGCGAGAGGACCgcgctgatgatgttgaacaGGAATCCACCGAAGCTGTCAAAGCATCAGTCTCCGACCATGTTCATAAAGTTGAAGAAACGATTTTAGATCAAAGTGTTGTGAAAGAGGAATCTGATGCTAATTCCCATTTTGAAGAATATCTTAATGATTATTCGGAGGATCCAGAGAGGCTGGACGGCGATGGTGATGTGTATCAGACAAATTTTGGTATCAACGTTGACATTAAATACGAACCGGTGCATTCTTATGGTGAAGAAGTGTACCTAGTCAATGTTACAGCTGACGAGAGTCCATCTGCTGCGATCAGCACCGTCGCAGCGGAAGCGGCGGACTTGGACCCGGATGCTGACATTTATAGGGAACCTGGGAAGAGGCGCGCGGATCGGTCAGAAGCTGACACTGATGCTGCGGTGAAGAAATCTAAAGTGACTAAATACTTATGCGTGAAAGAGGAAACCGAATGTAGCTACGATGGTGAGGAGGCCAGCTCGGATTACACTCCTGAACAAGGATACTCCAGCGTTTCCGGTGGCAACAATATTGCAGCGAAAGAGGAATTCAATGATCACGCTGAACATTTCGAAGCAGACGAACTGGATATCGAGGTGGAGTGGACCATGCACGTTCAGAGCGGCACGGGTGGCAGTGACGCGAATGGAAGAAAGATGAATAGGTCCGTCCAAGATCGCAGCGGGATGTCGCCGGAGAGCGAGAAGCGCACGAAAAAAGCAGCTACCAGCAAAATGAAGGTGAAGACTTCTAACATCTTCACGTGCGGCAAGTGCTCGTTCACAGCTAAGTACAGAAGGTACACCGAGCACGTGATCACCGCGTGCTCGGACAGGTGCTGGAGCTGCACACGCTGCGCCAAGCAGCACGAGAGCTTGATCTTGTACGTCAAGCATTTGAAGGATGAGCACGGGTCGTCGTGCCCGGAATGCGGCGAGGTGATCAAGGTGCCCAGCCACCTCCACCGGCACATCTCCATCCACGTGCGGAGCCTGTACTTGAACAACAGCAACTACCTGACGGAGTTGACGTGGGCGTACGAGTGCCGGAAGTGCGGTAAGGTGGAGAGCTTGGAGGATCTGTTCACCCACTGGGAGTCACACCTGAGCTCGCTCGATGCGGCGGCGCCCGAGAACAAACCGGACATGAAGCAGTTGAGCCCGGAAATGGTGCAATGTGTTATAGAGAGGCTGTCCCTGAAAGCGAAGCAGAACAAGGGTGAGCTGATCCATTGCGTGGTGTGCCCCAAGAAGTTTGACAGGAAGAACGACACGAAGCGGCATCTGATAGAGCATCTCCTCAACAAGGCGCTCTGCGACAAAGTGGTGACCAACAACTGCCTCCGCTGCCCGATCTGCAGCTGCGACCTGCTGGACGTGTACACCTGGAAGCTGCACATGCGCGACCACGCCGACCTGCCGGAGTACCAATGCAAGACGTGCAAGAAGCGCTTCAGCGACTCCAGCAACCTGGCGAAGCACAAGAAAGTGCACAACTTCTACTCGTACGTGTGCGACCTGTGCGGCGGCAAGTTCCAAGCGGAGGCCAGCATAGTCaagcacctgatgCTCCACGAGCAGCCGCCGGTGCACTGCAAGGTGTGCAAAGCGACGTTCTACTCCTCCTCGCGCCTGAACATCCACATGAAGCAGCGCCACCAGCTTAGCACGTTCCCGTGCATGATATGCAAGAAGCGTTTCAACAGCCTGAAGGACAAGTGGGACCACATGTGGGACAAGCACAAGCAGAGGAGCGTGGAGGCCGACTGCCCCATATGCATGAAGTCGTTCAGGAAGAGGAGCGACGTCAAGCATCACCTGAAGGAGGAACACGGGTGA
- Protein Sequence
- MNETPKRKSRKSKLELRECSDDEDENIMALQAGIDKLVNLKKHLLKGGKHEVEEATAPVNPINFHVQVKVEKCVDGDDEQNDFVVADGASAGADGDGEAECEKRPEKSSTSVDKIFEHHYYLRILQPSTKGSIIRRIKEYVFTKSSLRAGLEAQAKLNTSPADRYIQIELNNVHCQILTPARPRHDEVIQKCLQQWLSWCESWPEVRETPLLYKCYVCSKGWWRLHPFREHIKEHDDPHLEIRAESRQYQFNVVASVNKSDVMKVVNVDGVCHKCDKPIEYHAGKNANYLCTGCKLEVTSCSKLRTHQAVCVKYIEMKFKKQIQSSKGLMVCNLCGSHCVTERHLQEHLITHHSPRSDDLTLIQYTVCKYCNMNFFNQTYHNCPRKIKCYKCSYCCRKFSSPAMLDLHNAVSSSRTSKCEVCGHSMKDCMMLEHMLSHTRNYGAVYWCRKCDYNILFTKYTMLLNHMRFHNKYTNKRRFTYKMLLPTTCINGEFAASMRTIDISQSNVMDFLLGKHLEFGKLKAYYPISRSGNVDDIDKVPDILVGDDGGVDVVAAAGAARADHSDHLALQLDAEIQRDLEMEKAISKVFKASRCYKKFLEKESAEPTDDYLYDDDLIILEKPDDVLIIIDSDTDDRNGDEDVADAEDGRMNEREDRADDVEQESTEAVKASVSDHVHKVEETILDQSVVKEESDANSHFEEYLNDYSEDPERLDGDGDVYQTNFGINVDIKYEPVHSYGEEVYLVNVTADESPSAAISTVAAEAADLDPDADIYREPGKRRADRSEADTDAAVKKSKVTKYLCVKEETECSYDGEEASSDYTPEQGYSSVSGGNNIAAKEEFNDHAEHFEADELDIEVEWTMHVQSGTGGSDANGRKMNRSVQDRSGMSPESEKRTKKAATSKMKVKTSNIFTCGKCSFTAKYRRYTEHVITACSDRCWSCTRCAKQHESLILYVKHLKDEHGSSCPECGEVIKVPSHLHRHISIHVRSLYLNNSNYLTELTWAYECRKCGKVESLEDLFTHWESHLSSLDAAAPENKPDMKQLSPEMVQCVIERLSLKAKQNKGELIHCVVCPKKFDRKNDTKRHLIEHLLNKALCDKVVTNNCLRCPICSCDLLDVYTWKLHMRDHADLPEYQCKTCKKRFSDSSNLAKHKKVHNFYSYVCDLCGGKFQAEASIVKHLMLHEQPPVHCKVCKATFYSSSRLNIHMKQRHQLSTFPCMICKKRFNSLKDKWDHMWDKHKQRSVEADCPICMKSFRKRSDVKHHLKEEHG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -