Oale005512.1
Basic Information
- Insect
- Ornithoptera alexandrae
- Gene Symbol
- -
- Assembly
- GCA_029030555.1
- Location
- JARDVY010000027.1:2118520-2129014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8 7.2e+02 1.6 0.1 2 23 266 287 266 287 0.79 2 11 0.002 0.18 12.9 3.8 1 22 292 313 292 316 0.91 3 11 0.0012 0.1 13.6 0.8 2 23 431 453 430 453 0.94 4 11 0.0012 0.1 13.6 0.1 1 23 459 481 459 481 0.96 5 11 0.0099 0.9 10.7 0.1 1 23 492 515 492 515 0.92 6 11 0.00011 0.0096 16.9 7.8 1 23 520 542 520 542 0.98 7 11 3.4e-05 0.003 18.5 1.1 1 23 548 570 548 570 0.97 8 11 9e-05 0.0082 17.1 4.9 1 23 576 598 576 598 0.98 9 11 1.6e-07 1.4e-05 25.8 0.5 1 23 604 626 604 626 0.98 10 11 0.00097 0.088 13.9 3.6 1 23 632 654 632 654 0.98 11 11 4.6 4.1e+02 2.3 4.0 2 13 687 698 686 712 0.79
Sequence Information
- Coding Sequence
- ATGGAAGTGTATCTATATAATTCTACAGTTTGTCGTTTATGTGGGGAAGAAAATGACAATGGAAACTTATTGTATTCAAATGaagaaaataatcaaaatcttagtgaagtaattaatacttatttaccGATTAAGGTATCAGATGATGGTCATCTTCCTCGTACTATTTGCCCGGGTTGCACAATACAATTAGAAGCTACAGTAGAATTtctcaatttaattataaatggcCAGAAAATAATTAGAGAGCttcatcaaagagaaaaggattATAAAAAGACTTTATCAGCCCCAAACGAACCTGAAATTATAACtgagaaaataatatacgaaataaatactaGTAATGGAGTGTACCAAATAGAACATCCTATTGCACTCCAAGTGGCCGGGTTGGAAAAACCTAAAAGAAAAAGAGGTAGGCCACCAAAAAAGCCAAAGAGTCCTGAGGAGTTAACAAAGGTGGAGACTATTAAcgtaaaagaagaaaaaagaaaaagtgaaGGCAATGACAGTGATGAGCCAACAGGCAAGCGACGGAGGAAAACACCTACCAGATTTAAGGAAGTGGTTCAGGGAAAAGAATTGGAAAGGATATTCAAAGAAGAGGGGATGACTGATGGTGAAGAGagtgataatgaaaataaacaagttgTAGTAGACCAATCACCAAAAGTGCCAAATTCAAAGGAACCAGAAGTTATAGGGCATGTGGAAACATCTGGAGAGATAGTTGTTGTTACAAAAGGGAAGGGAAGGGGCCGACCAAAAGGACGCTCGCGTCAAACGCGTGAGCAGTGTATGATCTGCGGCATGCAGTTTTGGAGCATCGGGCGCTACATGTCGCATATCGCGCAGCACGGCCCGGTCCTCTACCAGTGCACACAATGTGGCGAAAGTTTCTCTACTAGACTTAAGTTCTGTGATCACCAAACTGTGACGAAGCATGTTGGACAGAACATTCTTCAGTGCAAGGATGTAACACCTGTTGCATCCACATTGTCGAAAACAACAGTTAAATAcggtaaaagaaaaaacaaggATGTTGAAATCTCTCATACACCAAATGTACTGGCATCAGTAAATAATCTAGTCAATGAAGAACATCAGGTAGAAATTTCGTCTAATGGTTCgccaaatttaaatatcaaggAAGAGTGTAATGAGAAAAATGAAAAAGATGATGTAGTAgactcaataaaaaaaaataataagtctGATGAAAGCAAAGataGTATTGATTCACCGTCAAAGCCTGAAGGTAAAGAATATGGAGAAAAGGATAGGATTAAATGCAATTACTGTGAAAAAGTCTTTAGGAGTCGTCAAAGTAAATCACTCCACATAAagGCGGTGCATCAGGGCGAGAAGCCGTACAAGTGTACCGAGTGCGGCGCCGCCTTCGGTTACCCGCGCTCGCTCGCGCTGCACTCAATCTCTCACCGTCGGCAGTGCGCAGCCGCTGCCAGGGGATACGCGTGCGACCTCTGCGGAAAGgtgCTGAACCATCCGTCGTCGGTGGTATACCACAAGCAGGCGGCGCACGCGGGGCAGCGATACGTGTGCTGCACCTGCGGCAAGCATTTCCGGCACAAGCAACTGCTACAGCGACACCAGCTCGTGCATTCAATACTGCGACCCTTCAACTGCAAGTCTTGCAATGCCACATTTAAGACTAAAGCGAATCTTATAAACCATCAACTTCTGCATTCCGGTGTCAAGAAGTTCAGCTGCGAGATCTGCAAACATAAGTTCGCTCACAAAACGAGCCTCACGCTGCACATGAGATGGCACACTGGACTCAAGCCATACTCTTGTAATCTGTGCGGCAAGAGCTTCAGCCAGAAGGGTAACCTGTCCGAACACGAACGCATTCACACGGGCGAAAAACCGTACCAGTGCACCTGGTGCCCGCGCCGGTTTACCACCTCCTCACAGCACCGACTGCACGCGCGGCGGCACGTCGCCGAGCGCCCGCCCTGCGGATACTGCGCCAGCAGGTTCGTGTCGCGCGGCGGATGGTCAGGTGCGGTGCGCCGCGAGCCCGGCGGCCGGATGCGCTGCACGGTCTGTGGGCGCGTGTTCGTCGAGCGTGCCGCGCCGCCGCGACACGCCCGCCGCCACCTCCAACACCACGACAAGCCTGTGAAGCAAGTGAGCCTACTGGTCCAAGACAACCAACAGCCGCCGGCGGAGGAGGTGGTGGAAGCGGAGGTGCACACCGCGGAAGAAACCGAGGAGAGGGTCATTTACATCACGTATGACGTGGAGGAGTCGCCGCCTTCCCTCCACATGCTTGGCCGCGAACAGACTGTCGAATATGACGACACGAAGATACTGTCGACACGTGAACTGTACTCGGGCCCGTCGTTACTGATGCCGCAAGAGGGACTGGAGCAGCTGGAACTGCAGCGACTGGAACAGCCCACGCAGGACGAAGAAGGGGATCTTGTGTTGGAGAATGGTGCGCGGCAACACTTACCCGTGACAGATGAACATGGCAACCCTCTGCACTTCTCCATGCAGGACGGCACCCAGCTCGCTATCACGTCTGTTGATGGCAAATCTTTGcagGTCATCACGCAAGACGGTCAGACCATACCTGTGGAGATCAACGGATACACTGATGAGGAGGTGGACGGTCCTGAAACTGTGGTGCACCAGCTGAATCTGCAGAAGAGCGTCGACAGCACCGGCTCGTCCGCGCTCACGCAATATTACACGCTAGTCTAG
- Protein Sequence
- MEVYLYNSTVCRLCGEENDNGNLLYSNEENNQNLSEVINTYLPIKVSDDGHLPRTICPGCTIQLEATVEFLNLIINGQKIIRELHQREKDYKKTLSAPNEPEIITEKIIYEINTSNGVYQIEHPIALQVAGLEKPKRKRGRPPKKPKSPEELTKVETINVKEEKRKSEGNDSDEPTGKRRRKTPTRFKEVVQGKELERIFKEEGMTDGEESDNENKQVVVDQSPKVPNSKEPEVIGHVETSGEIVVVTKGKGRGRPKGRSRQTREQCMICGMQFWSIGRYMSHIAQHGPVLYQCTQCGESFSTRLKFCDHQTVTKHVGQNILQCKDVTPVASTLSKTTVKYGKRKNKDVEISHTPNVLASVNNLVNEEHQVEISSNGSPNLNIKEECNEKNEKDDVVDSIKKNNKSDESKDSIDSPSKPEGKEYGEKDRIKCNYCEKVFRSRQSKSLHIKAVHQGEKPYKCTECGAAFGYPRSLALHSISHRRQCAAAARGYACDLCGKVLNHPSSVVYHKQAAHAGQRYVCCTCGKHFRHKQLLQRHQLVHSILRPFNCKSCNATFKTKANLINHQLLHSGVKKFSCEICKHKFAHKTSLTLHMRWHTGLKPYSCNLCGKSFSQKGNLSEHERIHTGEKPYQCTWCPRRFTTSSQHRLHARRHVAERPPCGYCASRFVSRGGWSGAVRREPGGRMRCTVCGRVFVERAAPPRHARRHLQHHDKPVKQVSLLVQDNQQPPAEEVVEAEVHTAEETEERVIYITYDVEESPPSLHMLGREQTVEYDDTKILSTRELYSGPSLLMPQEGLEQLELQRLEQPTQDEEGDLVLENGARQHLPVTDEHGNPLHFSMQDGTQLAITSVDGKSLQVITQDGQTIPVEINGYTDEEVDGPETVVHQLNLQKSVDSTGSSALTQYYTLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00180709;
- 90% Identity
- iTF_01494535;
- 80% Identity
- -