Oale007086.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ornithoptera alexandrae
Gene Symbol
-
Assembly
GCA_029030555.1
Location
JARDVY010000030.1:12546916-12554878[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 7.1 6.4e+02 1.7 1.0 2 23 282 304 281 304 0.83
2 8 7.5e-05 0.0068 17.4 2.5 1 23 408 431 408 431 0.96
3 8 0.0001 0.0094 16.9 1.3 1 23 619 641 619 641 0.98
4 8 1.9e-06 0.00017 22.4 1.5 1 23 646 668 646 668 0.97
5 8 9.8e-06 0.00088 20.2 0.9 2 23 675 697 674 697 0.92
6 8 3.9e-06 0.00036 21.4 2.2 1 23 703 725 703 725 0.99
7 8 1e-05 0.00092 20.1 2.6 1 23 731 753 731 753 0.99
8 8 2.1e-06 0.00019 22.3 2.1 1 23 759 781 759 781 0.99

Sequence Information

Coding Sequence
ATGAGGAACGTGGGTCCCCATCTTCTAGAAGATAAAATGGATGATGCTGTCACTCATTATATCAACACACACCAGTCGACCGAGTCTGTTCATGTGGATTCTAATTCTCTTGCACTCAACGTACAAGACGACTGTGGCGGTCGAGTGGTAACAGTAATGCAGCCATTAAGTTTTTCAACGACACAGATGTGCAGACAAGTGACAGTAAATGAACAAGTTGGAGAAGGACAGTGGAATGAAGAGCTCCTTGATCCTGAAGTACGATTGGCAGCTTTAGTAGCCCATTTCTCACAGCATTCGAGACctccacatcatcatcacccatCTCATCACAAGATATCAGCAGTCAGGAATGATGTGGACACATCTGTTATATTAGATGCACCAATGAGGCTGTACAATGCTCAAACATTGgAGCCACAATCGGAGTCCATTGTAGTGCAAGTCCCACCTCAGTTACCACCACTGCCACCATTACAACAGATGAAAAGGTGTCAGGATGCAGATTGGTtccataacaaaaataaaaatgcattaaagGAAAACAATCCAATGTTATCAGAGCATGAAGGCCCAGTCATGGACCTCGGTGCTAGCGCCTCCCCAGCACAGAATAAACATCAAAGCAAGAAAAGTTTGCCCCACAAGAAAAGGATCTCTAGAAAGCTTAAAAGGAATACAGGGAGCAGCACTCCTCAGCAAGAGCAAATTGTGGTGATTCATTGCAATTCGGAGATGTCGCAGGAGGAGATCCTTCCAGATAGTTTTGTGAGTAGTGTGCCACACCCTGAACACTTGGCAGAAGAAACGCATCATATGACACATGACATGCGCCCAATATTGGTATGTCAGTTGTGCGGTGAGTTCTATGGAGATGAACAACTTAAGTTCTACCACCACCTCAAGCAGCATTATGAGCCACATGGaactataataattgaaaatccTGTCGTACCAGACTTAAGCATGGATAAGATGACAAACACCTGCATAGTCGATAATGTTCCAACTCTTCCGGATTCCTTGGTCGAACTTTCATTAGAGAACACAGTACCAAAGTCCATGTACCAATCAATggataaacatatattatatacgtcCAGCGATAAAACCCTCTCGTGCCACAACAATAAGGTGCAGTATACGATGGCGAGCGAAAAGGAGCTTCCGCAGGACGCCGGCAAGTCAGACCTGTACGAGACGCTGGCCAAGCTGGAACTGTACAGCTGTCCCAAATGCGACAAGTCGTTCAGGAAACAGAAGCAATGCGAGGCGCATATGAATGAGGCACATTTGAATCCGAAGTTAGAAGATATGGGTGAGTTCAGCGAGCCGGAGGACCTGATGGAGGGTATCCACGTTGCGGTGGAGGAGGGCGAACAATATGAACCTGCACTGCTTCCACACCTCATCGTGGAAAACGGTCACGTTCACCAGGACCAGGGCAGGCACTGgtaTATGCGTAACGGCAATAATGACGTGTGCGGCTGCGGCGCGCCGGATTACTGTGCAGTATGTCCCGGCGCGGAGCCGCCGCCCGGTGTTGCCCCAGCCCCGCCCCACATGCCCGCCCCGCCCCCCGTCTCCGCACCAACCGGCGCGCCTGGCCCCGCGCCGCCACAGCTTCCGCCTGTTACCACAACCGCTGCAATACCGCGCCATCATAACCACACTCCACAACTTAAAGAGGAAGTTCTACAAAGGATCTTTAACAATGAGGTACCTAATCAGGAAAATTCCAACTTCGCGGAAAGCATTATCCCGGACAACCCTGAACCTGCGCCTCCGCAACCCCCGCAAGAAGAAGAGAGGACAACAACAGCGCCAGGGGAAAAAAGAAAACCGACGAAAAGATTCGAGTGCCCACTGTGCGAGCGGGTGTTTCAGCACCGGAACAGTCTACTGTACCATATGCTGATGCATGGAGAGAGGCAGCACTACTGCAAAGAATGCGACAAAAGTTTTTACACTGCCGCTGCATTGAAGATCCACCGGCGCGTTCACAACGATGACCGGCCGTGCGCTTGCGACGTGTGCGGCCGCAGCTTCCGCCAGTGGAGCGACCTCAAATACCACAAGGCCTCCATACACTCTGATCAGAAGGAGTACAAGTGCGAGTTCTGCAACAAGGAGTTCGCGCGGCGCTACTCGTTGAACTTGCATCGGCGTATTCACACGGGCGAGCGCAACTACAAGTGCGACTACTGCAACAAGACTTTCCGCGCCTCCTCGTACCGGCTCATCCACATGCGCACGCACACCGGTAACAAACCATACAAATGTCCGCAATGCGAGAAATGTTTCCGCGTAGCGTACGACATGCGGCGGCACATGCTTATCCACGATAAGGTGCGTCTGAGGGTCGACGAGGTGAAGGTGAAACCTAAAGACCCCAAGGAAAAGAAGCCGCCTGCGAAATCTGAAGATATCAAAAGCAAGCATATCCAGGAAGAAAAGTCAACAAAGAAAACCTCTTCTAGCCGCCTACCGATATTGAGAAGTATCTTAGACAAGAAACAACCTCAAAAGTCCACTAAAAAGACACAAACTAAAAAGGGTGCACCAAATGTAACTGTCACGACGAACAAAGAGCAAATGAAGGTCAATGATGAATACACAAACAATGTGGAAGTATTTGATACAAGACAAGCAGAGCACAGCAAGTATAAAGATGTGTTCCAATACAGAAGTAACGAAATGCTGCATTCGTATAAAAAAGATTGTTCCGACGAAATTACCTTTAAAGGTAATGATCGAGGAAATGAAGAAAGAGACCTGGCCGTTCTGCGACCGATATTCAGGAACAGTGCTGCTATGGAAGACTTGGAGAAATCAAATGCGCGACCGGAGAACACCGATGGCAAATTGCAAGTATTCACTCATGTGGAGAAAAGCAAGGGGTACAACCTACCCATGGGCTTCCCTCACCAGCCTGCCTCACTAAACGATGTCAGATTAGAGAGAGACCTGAACAGGGAAGCAAGAATAGACCCATTATCTGGAGAAAACATCGACAATGTATTTTTAGAAAGATTAAAtgctttatataacataacagCAGTATGA
Protein Sequence
MRNVGPHLLEDKMDDAVTHYINTHQSTESVHVDSNSLALNVQDDCGGRVVTVMQPLSFSTTQMCRQVTVNEQVGEGQWNEELLDPEVRLAALVAHFSQHSRPPHHHHPSHHKISAVRNDVDTSVILDAPMRLYNAQTLEPQSESIVVQVPPQLPPLPPLQQMKRCQDADWFHNKNKNALKENNPMLSEHEGPVMDLGASASPAQNKHQSKKSLPHKKRISRKLKRNTGSSTPQQEQIVVIHCNSEMSQEEILPDSFVSSVPHPEHLAEETHHMTHDMRPILVCQLCGEFYGDEQLKFYHHLKQHYEPHGTIIIENPVVPDLSMDKMTNTCIVDNVPTLPDSLVELSLENTVPKSMYQSMDKHILYTSSDKTLSCHNNKVQYTMASEKELPQDAGKSDLYETLAKLELYSCPKCDKSFRKQKQCEAHMNEAHLNPKLEDMGEFSEPEDLMEGIHVAVEEGEQYEPALLPHLIVENGHVHQDQGRHWYMRNGNNDVCGCGAPDYCAVCPGAEPPPGVAPAPPHMPAPPPVSAPTGAPGPAPPQLPPVTTTAAIPRHHNHTPQLKEEVLQRIFNNEVPNQENSNFAESIIPDNPEPAPPQPPQEEERTTTAPGEKRKPTKRFECPLCERVFQHRNSLLYHMLMHGERQHYCKECDKSFYTAAALKIHRRVHNDDRPCACDVCGRSFRQWSDLKYHKASIHSDQKEYKCEFCNKEFARRYSLNLHRRIHTGERNYKCDYCNKTFRASSYRLIHMRTHTGNKPYKCPQCEKCFRVAYDMRRHMLIHDKVRLRVDEVKVKPKDPKEKKPPAKSEDIKSKHIQEEKSTKKTSSSRLPILRSILDKKQPQKSTKKTQTKKGAPNVTVTTNKEQMKVNDEYTNNVEVFDTRQAEHSKYKDVFQYRSNEMLHSYKKDCSDEITFKGNDRGNEERDLAVLRPIFRNSAAMEDLEKSNARPENTDGKLQVFTHVEKSKGYNLPMGFPHQPASLNDVRLERDLNREARIDPLSGENIDNVFLERLNALYNITAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00197588;
90% Identity
iTF_01494531;
80% Identity
-