Basic Information

Insect: Ornithoptera alexandrae
Gene Symbol: -
Assembly: GCA_029030555.1
Location: JARDVY010000061.1:15194-19834[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.031 2.8 9.1 0.5 3 23 225 245 223 246 0.93

2 10 0.0016 0.14 13.2 0.4 2 23 272 294 271 294 0.95

3 10 0.055 5 8.4 0.4 2 23 318 339 317 339 0.95

4 10 3.8e-06 0.00034 21.4 1.6 1 23 343 365 343 365 0.99

5 10 0.008 0.72 11.0 7.3 1 23 370 393 370 393 0.94

6 10 0.00015 0.013 16.4 1.8 3 23 403 424 401 424 0.95

7 10 5.9e-07 5.4e-05 24.0 1.4 1 23 430 453 430 453 0.98

8 10 0.0068 0.61 11.2 0.6 1 23 459 481 459 481 0.96

9 10 2.7e-07 2.4e-05 25.1 1.5 1 23 487 509 487 509 0.99

10 10 0.0002 0.018 16.0 1.7 1 23 515 538 515 538 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.031	2.8	9.1	0.5	3	23	225	245	223	246	0.93
2	10	0.0016	0.14	13.2	0.4	2	23	272	294	271	294	0.95
3	10	0.055	5	8.4	0.4	2	23	318	339	317	339	0.95
4	10	3.8e-06	0.00034	21.4	1.6	1	23	343	365	343	365	0.99
5	10	0.008	0.72	11.0	7.3	1	23	370	393	370	393	0.94
6	10	0.00015	0.013	16.4	1.8	3	23	403	424	401	424	0.95
7	10	5.9e-07	5.4e-05	24.0	1.4	1	23	430	453	430	453	0.98
8	10	0.0068	0.61	11.2	0.6	1	23	459	481	459	481	0.96
9	10	2.7e-07	2.4e-05	25.1	1.5	1	23	487	509	487	509	0.99
10	10	0.0002	0.018	16.0	1.7	1	23	515	538	515	538	0.97

Sequence Information

Coding Sequence: atgaatGTAGACGGCATGTGCCGGTGTTGTCTGGCACGGCCGCCCGATAAGGACCTGAAGACACTTTACACACGGCTTGGTAAAACCGAAGTTTATGGCGATATGCTAAAGGAATGCTTCGaaataaacTTGCCGCTCGGGTCGGACGGCTTCGGCGGTATATGCGACGTGTGCTCGTCGAGACTCCGCGACGCTGCCGACTTCAAGGAGCAGGTCATCCGTTGCCAGAAGGAGTTCCAGCTGCAATTGCTAGCGGGGCTCGGCATCAAAGATGAATTATCAACGAAGGTGAAGCTGGAGGTGTCTGATGCTGAGGAAGAGAGGGGTGTATATTTCCTAgAACTGAAGGAGGAGATGTCTGATGAAGAGCTGAAGGTGAAAGAGGATGGGGATCTGGCAGCGATGTTGGGGCTCCGTGACGTCGCGATGAAAAAGAAACTTGTCAAGAGGAATGGTCAGAAGCTAAACATAGAGGaatgTAAAAGCTCGCAGAAGAACGTCCCAATCAAGCTCTCCTTTAGGAGTCTATCGCAGGTAGACAAACTGAACTCTGTCAAATCATCGAGGGTCCGATTCGTCAGCGACAACAACAAGCACAAGATAAACCTGGAGAACATCCTCAAGTACTCCAACTGCACGCCCTTTTCGAACAAGACAATCGCGGGAACAGCGTGCGCTTACTGCAAGGAGATCTACCAGGACCCGCAGGAGCTCCGCATCCACAGCAAACAGCATCACAAAGTCGGCGACCTGAACGACAACAAGCGCATGGACAAGAACAACCTATCCATCAAGTTAGACATAACGGACCTCAAATGTACAATCTGCAGCAAGGAGGTCGGGAACATAACGAATTTGAAGAGGCACCTGACCAGCGAACACGCCGTCAAGTTCTACACGGACGTCAAAGACTACATCCTCGAGTTCAAGCTGACGTCGTCGCAGAACCTCAACTGCGCATTGTGCAACTCAACGTACGAGACCTTCAAGATGCTGCTGCAGCACATGAACGGCCACTACAGGAACTACGTCTGCGACATCTGCGACATGGGCTTCATAAACCAGCACCGACTCAAGAGCCACCAGCGCACCCACGAGATAGGCACATTTAAATGCAACCACTGCGATAAGGTGTTCAGCACGCGCGTCAGGATGACCTGCCACATGAAATACACGCACAACACCAACGCCAGGTACACCACCAACTGTCCCCAATGCGACCAGTCATTCACCAGCTACTACCAACGTAATAGACACATGTTCAAAGACCACAACGCTGCCGCCTCCTACAAATGTAACGTATGCGATAAATCCTTCATACTGAAGTCCAAGTTGACATCGCACATCAAGAAGGTACACCTGATGGAGCGGAACCACATGTGCGAGGAGTGCGGCCAGGGCTTTTTCATAAAGCAAAGCTTGGACGAGCACATGGTGAAACATAAAGGCGAACGGGTCTTCAAGTGTACGGTGTGCAACAAAGCTTACGCTAGGAAGAAGACGCTGAGGGAGCACATGAGGATACACAACAACGACCGCAGGTTCAAGTGCGGCGTTTGCAGCACGGCGTTCGTGCAGAAGTGCAGCTTGAAGGGACACATGCTGTCCAACCACGGCGTCACACTCACAGAGTTTGAGAGTCGCAACTGA
Protein Sequence: MNVDGMCRCCLARPPDKDLKTLYTRLGKTEVYGDMLKECFEINLPLGSDGFGGICDVCSSRLRDAADFKEQVIRCQKEFQLQLLAGLGIKDELSTKVKLEVSDAEEERGVYFLELKEEMSDEELKVKEDGDLAAMLGLRDVAMKKKLVKRNGQKLNIEECKSSQKNVPIKLSFRSLSQVDKLNSVKSSRVRFVSDNNKHKINLENILKYSNCTPFSNKTIAGTACAYCKEIYQDPQELRIHSKQHHKVGDLNDNKRMDKNNLSIKLDITDLKCTICSKEVGNITNLKRHLTSEHAVKFYTDVKDYILEFKLTSSQNLNCALCNSTYETFKMLLQHMNGHYRNYVCDICDMGFINQHRLKSHQRTHEIGTFKCNHCDKVFSTRVRMTCHMKYTHNTNARYTTNCPQCDQSFTSYYQRNRHMFKDHNAAASYKCNVCDKSFILKSKLTSHIKKVHLMERNHMCEECGQGFFIKQSLDEHMVKHKGERVFKCTVCNKAYARKKTLREHMRIHNNDRRFKCGVCSTAFVQKCSLKGHMLSNHGVTLTEFESRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00923074;
90% Identity: iTF_01494509;
80% Identity: -