Oale016462.1
Basic Information
- Insect
- Ornithoptera alexandrae
- Gene Symbol
- -
- Assembly
- GCA_029030555.1
- Location
- JARDVY010000110.1:134740-140417[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.021 1.9 9.7 1.6 1 23 19 42 19 42 0.96 2 11 0.0011 0.097 13.7 0.3 2 23 50 71 49 71 0.97 3 11 0.00039 0.035 15.1 0.5 1 23 75 98 75 98 0.96 4 11 0.039 3.5 8.8 2.5 1 23 105 127 105 127 0.97 5 11 2.3e-05 0.0021 19.0 0.2 2 23 132 154 131 154 0.96 6 11 0.00014 0.013 16.5 0.9 1 23 161 183 161 183 0.97 7 11 0.00043 0.039 15.0 4.0 3 23 193 213 191 213 0.97 8 11 0.001 0.095 13.8 0.1 1 23 224 247 224 247 0.93 9 11 1.5e-07 1.3e-05 25.9 1.6 1 23 253 276 253 276 0.96 10 11 2e-05 0.0019 19.1 0.8 3 23 287 307 286 307 0.98 11 11 0.072 6.5 8.0 1.6 2 23 314 336 313 336 0.93
Sequence Information
- Coding Sequence
- ATGATGGAAGAGCGTAGACTTGAGTATTTGAAGGCATCATATGTAAACCTTCCTTATAAATGTGAAAATTGCATCACCGCTTTTGATCATAAACTTACATTGAACTTACATATGGAACAAAGACATGGAactaaGAATGGTGGTCTCGTTTGCGATATTTGCAAGTCTGTGTTGAGTTCCGAGTCTTCGTACAAGGCTCACCAGCAGCGTCATTTAAGGCGGTATGAATGTGTCGAGTGTGGGAAGCGTTACAACAATGTTTATTCAGTCGTCAAACACTACAAGGAGCAACACGGCACCATAAACTTCCTGTACTCCTGCAGTAGTTGCGAATTTACCACAGAATCACAAAGGAGCCTGCGCTACCACAGGGACAAGCATAAAGCGAAGGTGCAATGCAATGATTGTGGCAACACCTTTGTTAATTCGACAGTACTGCGGGTGCATATGTtCACCGTCCACCGGCAGTCGGACCGCGTTTACTCATGCGAAGTATGCGGAAAACGTTACCACGCTAAGTCGAGCCTCGTGGCGCACAAGGCCAGGCACGACGGCGCGTCTACCAGCGACACTTTTTGCGCGGTATGCGGCACCCATTTCCGCTCTCAGCTGGGGCTGAAGCATCATCTGAAGACACATTCGAAACACATAAGGGACTCGGATAAACGATACGCTTGCAGTGACTGCGGATTGAAGTTCCTGACGAAGGGATTGTTGCAGGAGCACATTGACTGGGTGCACCTGAAGAAAGCAAAACACGAGTGCAATAAATGTCCCAagGTGTTCAAAAACAACTCCGGCTTACAGAAGCATATAAATTACGTCCACGAGAAGAAACGACCGCCGCGGAACAAGATATGCGACCATTGCGGGCGAGGTTTCACTACGCTGTCGATTCTGCGCGCTCACGTCCGCACCCACACGGGCGAGCGGCCCCTGCGCTGCGGCCACTGCACCGCCACCTTCGCCCACCCCGCCGCACGGTACACGCACACAAAACTATTGCATACAAATAACAAATGA
- Protein Sequence
- MMEERRLEYLKASYVNLPYKCENCITAFDHKLTLNLHMEQRHGTKNGGLVCDICKSVLSSESSYKAHQQRHLRRYECVECGKRYNNVYSVVKHYKEQHGTINFLYSCSSCEFTTESQRSLRYHRDKHKAKVQCNDCGNTFVNSTVLRVHMFTVHRQSDRVYSCEVCGKRYHAKSSLVAHKARHDGASTSDTFCAVCGTHFRSQLGLKHHLKTHSKHIRDSDKRYACSDCGLKFLTKGLLQEHIDWVHLKKAKHECNKCPKVFKNNSGLQKHINYVHEKKRPPRNKICDHCGRGFTTLSILRAHVRTHTGERPLRCGHCTATFAHPAARYTHTKLLHTNNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01176345; iTF_01495967;
- 90% Identity
- iTF_01495967;
- 80% Identity
- -