Oale013323.1
Basic Information
- Insect
- Ornithoptera alexandrae
- Gene Symbol
- -
- Assembly
- GCA_029030555.1
- Location
- JARDVY010000061.1:129160-130941[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.002 0.18 12.9 2.7 1 23 30 52 30 52 0.98 2 16 0.58 53 5.1 0.0 3 23 81 102 79 102 0.92 3 16 0.12 11 7.3 2.5 2 23 123 145 122 145 0.92 4 16 0.00029 0.026 15.5 1.2 1 23 150 173 150 173 0.97 5 16 0.0023 0.21 12.7 1.5 1 23 177 200 177 200 0.95 6 16 0.00012 0.011 16.7 1.6 2 23 203 225 202 225 0.96 7 16 0.13 11 7.2 0.4 2 19 231 248 230 250 0.93 8 16 0.0032 0.29 12.2 2.8 1 23 300 323 300 323 0.96 9 16 1.5 1.4e+02 3.8 0.4 3 23 352 373 350 373 0.89 10 16 1.1e-05 0.00098 20.0 0.3 1 23 395 418 395 418 0.97 11 16 2.2e-06 0.0002 22.2 2.1 3 23 425 446 424 446 0.95 12 16 9.3e-05 0.0084 17.1 2.0 1 23 451 474 451 474 0.94 13 16 0.00021 0.019 16.0 3.6 2 23 480 502 479 502 0.95 14 16 0.00022 0.02 15.9 6.5 1 23 506 529 506 529 0.97 15 16 0.021 1.9 9.7 0.5 2 23 536 557 535 557 0.96 16 16 0.047 4.2 8.6 2.8 1 23 563 585 563 585 0.96
Sequence Information
- Coding Sequence
- ATGCCAAGTGCTAATAAAAAGAGGAGAGGGAACCTTTTGACATTGTTCAACAACACAACGTTGATACCGTTTAAATGGCGGGGAAAATACATGTGCTTTTACTGTGGTGATGATTTCGCTGATTGCAATCTCTTGAGGAAACATACTAGGTCCCATGGCGCGGTCTCCGAAACTGACCGAGCGATCAGACTAGTTAAATCTGGTGATTCTGAAGTCAAAATAGATGTATCGGATATTGCTTGTGAATTGTGCGAAGAGGCTTTCGATAGTTTTGATCTTATCGTTGATCATTTATCAGTGAAACATAGATTGAACTACGATAGAGGGGTTCATTTAGATATAACAGCTTATCGTCTGGctgatttaaaatgtttgcactgcgatcaaaaatttgattattttaataaattgattattcataataacaaTAGCCATCCCATTCGGTGTTTCATATGTGACCAGTGTAAActgaagtttaataaaaaaagggattTAGACGCTCACGTTAGAACGCaacatagaaaattttatagatgCTTAAAATGCTCTCTAAATTTTCGAAACAACGTTGACTTTCAAAATCATAAACTAAATGCTCATACTTCCTCCTGTAACATTTGCTTTAGATCTTTCACTACTGCAAGCAAAAGGTTGAAGCATATGAAGATAGATCATGACTTAGGCGGGCTGCAATGCGGTTACTGTTTTAAAGTTATGACGACGAAGCAGAGTTTCCTTCGGCACGCTTCCTTTTGCACACAATATATCGATCGCATTAAAACTAACGGTTCAGTAGAAGCAGACGAAAGAAAACCTTCAGTTAAGAGGATTAGAAGTGACTTCGCTTGCCTCCTCAACATGTCCACGGCTATCCcatttaaacattatcttAGTAGGTTTAGATGTTTCTTTTGTCCTAAAGACTTTACCGATTGCGATGTTCTGAAACAGCATACCGTCACGGAACACCCATTGTgtgatataaaactaaattcttTGAAATTGAGAAATAGAGATGAAGGTCGTATTAAAATTGATGTGTCTACTCTTTTTTGCAAAGTATGCAACGAACCTATGTTTGATTTACGTCATTTAATAGATCATCTAACTGCGGAACATAAGGCCAACGTCGACAAATCTCTAGAATTCCACCTACAGGCATTTAGACTTGTTAAGGATAACTTCACTTGTCCAATTTGTGATGAAGTTTACAGATATTTCAGCACATTATTAAAACACATAAGCGTAACACATACGGACAATGGGAACATTTGCTCGTACTGCGGGAAATGTTTCAGATCACAACCCAATCTCCGAGCTCATGTTTCGCGAAGGCATAGACCTGCCTCTTTCAGCTGTTCCCATTGCAATATGGAATTCAAtaccaataataatttacaaatgcATCTGGGCAAAGTGCACGGCACCAAGGTTGTTCAATGTCTCGAATGTAAAGAAAGATTTACGTCTCGACACCATATGCAAAGGCACATGATTTACGCGCACAGTTCCGGGCACAAATGTACGCATTGTGATAAATTGTTTACTAGGAACTCTTTCATGGTCAACCATATAAGGCGGACACACTTAAAGGAGAGGAACATACAATGCGCTTTGTGTAGAGAGAGGTTTTTCGACGCGCAACGCCTCAAAATGCACATGGTTAAGCACTACGGAGAGCGTAACTTTCACTGTGACCTCTGCGGAAAGAAGTTCCTTTGGAAGAAGAACTTAAGAGGTCACATGACTTCGCACATGAAAAACACAACGAAACGTTtctaa
- Protein Sequence
- MPSANKKRRGNLLTLFNNTTLIPFKWRGKYMCFYCGDDFADCNLLRKHTRSHGAVSETDRAIRLVKSGDSEVKIDVSDIACELCEEAFDSFDLIVDHLSVKHRLNYDRGVHLDITAYRLADLKCLHCDQKFDYFNKLIIHNNNSHPIRCFICDQCKLKFNKKRDLDAHVRTQHRKFYRCLKCSLNFRNNVDFQNHKLNAHTSSCNICFRSFTTASKRLKHMKIDHDLGGLQCGYCFKVMTTKQSFLRHASFCTQYIDRIKTNGSVEADERKPSVKRIRSDFACLLNMSTAIPFKHYLSRFRCFFCPKDFTDCDVLKQHTVTEHPLCDIKLNSLKLRNRDEGRIKIDVSTLFCKVCNEPMFDLRHLIDHLTAEHKANVDKSLEFHLQAFRLVKDNFTCPICDEVYRYFSTLLKHISVTHTDNGNICSYCGKCFRSQPNLRAHVSRRHRPASFSCSHCNMEFNTNNNLQMHLGKVHGTKVVQCLECKERFTSRHHMQRHMIYAHSSGHKCTHCDKLFTRNSFMVNHIRRTHLKERNIQCALCRERFFDAQRLKMHMVKHYGERNFHCDLCGKKFLWKKNLRGHMTSHMKNTTKRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -