Basic Information

Insect: Ornithoptera alexandrae
Gene Symbol: -
Assembly: GCA_029030555.1
Location: JARDVY010000061.1:127259-128884[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.01 0.94 10.6 0.0 2 23 17 39 16 39 0.92

2 15 0.017 1.6 9.9 1.0 1 23 59 82 59 82 0.96

3 15 5.2e-05 0.0047 17.9 1.8 1 23 87 110 87 110 0.97

4 15 4.5e-05 0.0041 18.1 2.9 1 23 115 138 115 138 0.95

5 15 0.0048 0.43 11.7 1.4 2 20 141 159 141 163 0.93

6 15 0.002 0.18 12.9 1.6 2 22 170 190 170 190 0.95

7 15 0.21 19 6.6 5.0 1 23 246 269 246 269 0.95

8 15 0.029 2.6 9.2 0.1 2 23 297 319 296 319 0.94

9 15 1.3 1.2e+02 4.0 0.1 3 23 343 365 341 365 0.92

10 15 4.1e-05 0.0037 18.2 0.6 3 23 372 393 371 393 0.94

11 15 0.0049 0.44 11.7 4.5 2 23 398 420 397 420 0.93

12 15 0.0012 0.11 13.6 2.5 1 23 425 448 425 448 0.97

13 15 2.3e-06 0.0002 22.2 5.2 1 23 452 475 452 475 0.98

14 15 0.00035 0.032 15.3 0.3 2 23 482 503 481 503 0.96

15 15 5.8e-05 0.0053 17.7 0.6 1 23 509 531 509 531 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.01	0.94	10.6	0.0	2	23	17	39	16	39	0.92
2	15	0.017	1.6	9.9	1.0	1	23	59	82	59	82	0.96
3	15	5.2e-05	0.0047	17.9	1.8	1	23	87	110	87	110	0.97
4	15	4.5e-05	0.0041	18.1	2.9	1	23	115	138	115	138	0.95
5	15	0.0048	0.43	11.7	1.4	2	20	141	159	141	163	0.93
6	15	0.002	0.18	12.9	1.6	2	22	170	190	170	190	0.95
7	15	0.21	19	6.6	5.0	1	23	246	269	246	269	0.95
8	15	0.029	2.6	9.2	0.1	2	23	297	319	296	319	0.94
9	15	1.3	1.2e+02	4.0	0.1	3	23	343	365	341	365	0.92
10	15	4.1e-05	0.0037	18.2	0.6	3	23	372	393	371	393	0.94
11	15	0.0049	0.44	11.7	4.5	2	23	398	420	397	420	0.93
12	15	0.0012	0.11	13.6	2.5	1	23	425	448	425	448	0.97
13	15	2.3e-06	0.0002	22.2	5.2	1	23	452	475	452	475	0.98
14	15	0.00035	0.032	15.3	0.3	2	23	482	503	481	503	0.96
15	15	5.8e-05	0.0053	17.7	0.6	1	23	509	531	509	531	0.97

Sequence Information

Coding Sequence: ATGATTAAAGGAAATCACATCGAGATAAAAATCGACGTCTCGGAGATCTCATGCGAGATATGCAACGAACCATTCGCCACATTCGATGAGATAATAAACCATTTAATATGGAAACACAACATGGAATACGATAAATCTGTAGACACCCCGTTCCAAGAATACAGACTGGAGGATTTCCGTTGCCTTTTTTGCGAACAGCAATTTACTTACTTTGGATATTTGGTCAATCACGTAAATAATGTACACCCCCAAAACAGTTACAACTGTAACGATTGCGACGCGTCCTTTAACAAAAAGAGAGATCTAGCATTGCACTTACGGCATAACCATCGAGAAGGTGGATACCCTTGCTCCGAGTGTTCGCAAACTTTCAAATCTCACAGTTTACTGCGTAGCCATCAGAACGATTTTCACTTCAGAGAATGTAAATGGTGCGGACTGAACTTCGCTTCCTACAGTCTCCTACTAAAGCATACGCAATGCGACCACCCGGACGACGGCAGCGCCAAGTGCCCACATTGTTCCAAACAGTTAAACTCATCGCAAGGTTTAAAGCAGCATATGAACAAATGTAAGGTTAACATGTTAGTTAAAATAGAACGTCCTGTCGATAACAACTTCTCCAAAGACAATTTGCTGCAACCAAAGAAGAAACAGAATATACTCCAAATACGTCAGAACATCCAATGTGTCCTCAACATGTCAACTGCGTTGCCTTTCAAGTTTTTCGCGAAATATTGTTGTTTCTATTGCTCTAAGAAGTGTGTCGAATTTGACGAGCTCAAGGAGCACACTATTTCCGACCATCCGGTATGCGATTTGAAGTCGAAAAGCATGAAGAAATGCAAAGGTGAAAGGATAACAGTAAAAGTCGACATAACAGATTTGAGTTGTAAAGTTTGCGGTCGACAAACGGAAACATTGGATGTATTGATAGATCATCTTATATCCAAACATGAAGCGGCCTATGATAAATCTGTAACTGGATGTCTAGAACCTTACAAGATGGTAAAAGACAATATAGCGTGCCCATTCTGCCCAAATCGCGTGTTTAGATATTTTGGCATCCTATTGAGGCACATAAACTCTGagcatagtaataataatagaatttgCGATTTCTGTGGTCGCAGTTTCAAGAGCGTGACCAATTTGAAGGTCCACatcacgtacacgcacaccgGTGCGTGCGAGTGTGACGTCTGCGGAACTAAATACAAGAACCAGTGGTGTCTGAGCCGGCACAAAGCGAAGAGCCACAATGCGAAGGACTACAAATGCCCTAAGTGCCCGGAACTGTTCCAATCTCAATACCATAAGCAGAAACATTTGATCAAGGTCCACGACATCGGCCACAAATGTACGTACTGCGGGAAAATGTTTACCAGGAACTCGTTCATGAAGGACCATATACGGAGAACGCatttgaaagagaagaatgtgGTGTGTTCGGTCTGTAGTGAGAGATTCTTCGATAACTACTTGCTGAGAATGCACATGGTTAAACATGAGGGCCAGAGGAGGTTCAACTGCGAGGTATGCGGGAAAGCGTTTCTTAGGCGAAGTAATTTGAGTTCGCATAAGGAAATGCATAAAAAGTATGGACATTTACAGATCCAAGTGTAA
Protein Sequence: MIKGNHIEIKIDVSEISCEICNEPFATFDEIINHLIWKHNMEYDKSVDTPFQEYRLEDFRCLFCEQQFTYFGYLVNHVNNVHPQNSYNCNDCDASFNKKRDLALHLRHNHREGGYPCSECSQTFKSHSLLRSHQNDFHFRECKWCGLNFASYSLLLKHTQCDHPDDGSAKCPHCSKQLNSSQGLKQHMNKCKVNMLVKIERPVDNNFSKDNLLQPKKKQNILQIRQNIQCVLNMSTALPFKFFAKYCCFYCSKKCVEFDELKEHTISDHPVCDLKSKSMKKCKGERITVKVDITDLSCKVCGRQTETLDVLIDHLISKHEAAYDKSVTGCLEPYKMVKDNIACPFCPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKSVTNLKVHITYTHTGACECDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFQSQYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVVCSVCSERFFDNYLLRMHMVKHEGQRRFNCEVCGKAFLRRSNLSSHKEMHKKYGHLQIQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01159895;
90% Identity: -
80% Identity: -