Basic Information

Insect: Ornithoptera alexandrae
Gene Symbol: ham
Assembly: GCA_029030555.1
Location: JARDVY010000064.1:3112198-3134100[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.57 52 5.1 0.1 2 23 108 130 108 130 0.93

2 9 0.00056 0.051 14.6 0.6 1 23 137 160 137 160 0.93

3 9 9.3e-09 8.4e-07 29.7 0.1 1 23 166 189 166 189 0.98

4 9 1.2e-06 0.00011 23.0 1.7 1 23 195 217 195 217 0.95

5 9 4.4e-05 0.004 18.1 6.1 1 23 223 245 223 245 0.99

6 9 9e-05 0.0081 17.1 0.4 2 21 253 272 252 273 0.94

7 9 1.1e-08 9.6e-07 29.5 0.7 1 23 674 696 674 696 0.98

8 9 3.8e-07 3.4e-05 24.6 1.7 1 23 702 725 702 725 0.97

9 9 4.2e-06 0.00038 21.3 3.3 1 23 731 753 731 753 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.57	52	5.1	0.1	2	23	108	130	108	130	0.93
2	9	0.00056	0.051	14.6	0.6	1	23	137	160	137	160	0.93
3	9	9.3e-09	8.4e-07	29.7	0.1	1	23	166	189	166	189	0.98
4	9	1.2e-06	0.00011	23.0	1.7	1	23	195	217	195	217	0.95
5	9	4.4e-05	0.004	18.1	6.1	1	23	223	245	223	245	0.99
6	9	9e-05	0.0081	17.1	0.4	2	21	253	272	252	273	0.94
7	9	1.1e-08	9.6e-07	29.5	0.7	1	23	674	696	674	696	0.98
8	9	3.8e-07	3.4e-05	24.6	1.7	1	23	702	725	702	725	0.97
9	9	4.2e-06	0.00038	21.3	3.3	1	23	731	753	731	753	0.98

Sequence Information

Coding Sequence: ATGACTCAATCGATTgTTGTTGGAAAAAATGGTATCCGCGGTTGGATGGACGGTACGGCGGAGAAGACGAACTGGTTGAAACATGTTCGTTCCACAAACTATCTTCAGGATGTCAACGTGCAACATCTACTGGTTTCTGGACAGaTCTGGTACAAAGTGACGCGCGCGATAACTTCCGGTCAGGAACTATTGCTGGGACCGCGCACGCCGTTGCCACTGCAAGACGTGGTACCGACTGCTGCTCGCGAAAATTCTACTGTCAACTCTTCGAGCAGCTCACAAGCTTTAGCCGAAGAAGAGGATCGAGAGGATACGGAGCCGAGGTGTTCCTTCTGCGACTCACCTTTCCCGAACATTGATGTGCTCGACCGCCACCTGATCCAGGCGCACGCGCAACCAGCTTCTGCGTTCCACTGCGAACTCTGCAATCGAGCTTACAGCTCCCGAGCACTGTTGCTAAGACATCGGGCACTTGCTCATACAGACATAAGGAAATACCCGTGCGAGAACTGCCCTAAGGCATTTACCGATCCTTCCAACCTGCAGCGCCACATCCGCGTGCAGCACGTCGGAGCGCGCAGCCACGCCTGCCCTGAGTGCGGGAAGACCTTCGCAACATCCTCTGGTCTCAAGcagcacacacacatacactcCAGCGTCAAACCGTTCCAATGCAAAGTATGCTTTAAGGCTTATACACAATTCTCCAATTTGTGCCGCCACAAGCGAATGCATGTAGCGTGTAGAGCGCTGGTGGAATGCGGAAAGTGCGGTCAGTCCTTCACATCGTACGCATCACTAACGAAACATAAGAGGTTCTGCGATACGGCATCAGCCACTAACGTTAACTTAAGAGGCCAACTACCCCAAGGACTTTCGCAAATACCACCACTACCTAACGTGGCCATGAACAATCCGAATAACACTAATCCATTCCCCATGTACAGAGGGCCGGCTTTACCTCTTCCATACAACACATTTGCTCACTATCCGGCGTTATTTTCCGCCGCGGCCGCAGCTTGTCCACCAGAATTTCTTAATCCTTTGCTTTTTAATGTGCAAGGAGCAAGATTGGCCATGGAACATGATATGGCGATGAGCGCCAGTTTGGCATCTAAGCAACAAGAAGAACGCATGTCTGTAAAAAGTATGGACAGTACAAATTCTCTTGATGATATGAAAAGGATCAAAGACATGGACTATGAAGTAACTAAGCGAGAAGATAATTTAGATAGAATTACACAGACTATTTCTCACAGTTTGTATGTAAAGCCATCGCTTTCTTCAACAGAGGAAACTTCCATTCAGCAACGTCGCTCACCAGTAGCACCTGTACCGGTAACAATAAACCCCTTCGATTTTACAAGAGAAGACTTGAAACAGAATTCGCCATTTAATTTATCACTGAAACTCGATAATAATGATGTCATTGGTACTAAACCAGTGTCACCATCAGAAGTTAAAGacttatctaaaaatataggAAACAATGTTGATAAACTTTCTTCATTCATAGACGTCGAAGAAGAAGCTAAAAAAGATCAAGGCGATCAACCTCTAGATTTATCACTGTCTAAAAAGCAGAGTGATAAAGAACGTGAAATCGATAGCGATAATCGTTCCTTTCGTAATTTATCCATTAAGTCATATTCACCATCAGAAAGTCCAATCGAACGAGAGAGTAAAACGCCCGAAAACGATACTACTGACGTCGATGTAGAAGCAGTGGAACCAAAACGCGAGGATTCACCACAACCAATAGTATCCACCCCTCTAGCTTTTCCAATGCCCGTCCATCCTCAACACAATAATAGTCTGATTGATGCGATGTATCGTCCTCGATTTACGTCTTTCCACAATCCATCCgattcaattttaaatgctACTCATTCTCCATACGTACCCAGCCCGTTCAATTTTTTATCGCCACTTCTCGGTACTGACGGCCCAGATAGACAACCCAGTGCCTATGCCAAATTTAGAGAATTAAGTGCAGGTACTGGAAAACTTAGAGATCGTTACGCTTGCAAATTTTGCGGGAAAGTATTTCCAAGGAGCGCTAATTTAACTAGACACTTGAGAACTCATACAGGAGAGCAGCcatacaaatgtaaatactGTGAGCGATCATTCTCGATATCGTCTAACCTGCAGCGACACGTCCGCAACATACATAATAAGGAACGTCCTTTTCGGTGTCCCTTATGTGACAGATGTTTCGGTCAGCAAACAAACTTGGATCGTCATTTAAAGAAACACGAAGCTGAAGGTGGAGATTCGCCTAGTTCTGCTGACACTGAGAGGGAGGATGCTTACTTTGATGATATAAGATCGTTTATGGGAAAGGTAACTTGTTCGCCAGGTGTGCGAAGTCCGACAGCGATGTCTCCTCATGGGACTCACTCCACTCACCCATCACATCGTCCTCCGCTCGCCATTTCCACATAG
Protein Sequence: MTQSIVVGKNGIRGWMDGTAEKTNWLKHVRSTNYLQDVNVQHLLVSGQIWYKVTRAITSGQELLLGPRTPLPLQDVVPTAARENSTVNSSSSSQALAEEEDREDTEPRCSFCDSPFPNIDVLDRHLIQAHAQPASAFHCELCNRAYSSRALLLRHRALAHTDIRKYPCENCPKAFTDPSNLQRHIRVQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTASATNVNLRGQLPQGLSQIPPLPNVAMNNPNNTNPFPMYRGPALPLPYNTFAHYPALFSAAAAACPPEFLNPLLFNVQGARLAMEHDMAMSASLASKQQEERMSVKSMDSTNSLDDMKRIKDMDYEVTKREDNLDRITQTISHSLYVKPSLSSTEETSIQQRRSPVAPVPVTINPFDFTREDLKQNSPFNLSLKLDNNDVIGTKPVSPSEVKDLSKNIGNNVDKLSSFIDVEEEAKKDQGDQPLDLSLSKKQSDKEREIDSDNRSFRNLSIKSYSPSESPIERESKTPENDTTDVDVEAVEPKREDSPQPIVSTPLAFPMPVHPQHNNSLIDAMYRPRFTSFHNPSDSILNATHSPYVPSPFNFLSPLLGTDGPDRQPSAYAKFRELSAGTGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGVRSPTAMSPHGTHSTHPSHRPPLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01145419;
90% Identity: iTF_01495938;
80% Identity: -