Basic Information

Insect: Ornithomya fringillina
Gene Symbol: -
Assembly: GCA_963978525.1
Location: OZ021692.1:16270056-16274126[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.001 0.076 13.6 0.3 2 23 306 328 305 328 0.95

2 9 0.023 1.7 9.3 4.9 3 23 435 456 434 456 0.92

3 9 0.0013 0.098 13.2 0.6 2 23 524 546 523 546 0.94

4 9 0.0076 0.56 10.9 0.7 2 23 784 806 783 806 0.96

5 9 0.013 0.93 10.2 0.6 2 23 846 868 845 868 0.92

6 9 0.01 0.74 10.5 3.6 2 23 909 931 908 931 0.96

7 9 0.097 7.2 7.4 4.2 2 23 945 967 944 967 0.92

8 9 0.0001 0.0075 16.8 1.0 3 23 1031 1052 1030 1052 0.95

9 9 0.091 6.8 7.5 1.6 1 23 1146 1168 1146 1168 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.001	0.076	13.6	0.3	2	23	306	328	305	328	0.95
2	9	0.023	1.7	9.3	4.9	3	23	435	456	434	456	0.92
3	9	0.0013	0.098	13.2	0.6	2	23	524	546	523	546	0.94
4	9	0.0076	0.56	10.9	0.7	2	23	784	806	783	806	0.96
5	9	0.013	0.93	10.2	0.6	2	23	846	868	845	868	0.92
6	9	0.01	0.74	10.5	3.6	2	23	909	931	908	931	0.96
7	9	0.097	7.2	7.4	4.2	2	23	945	967	944	967	0.92
8	9	0.0001	0.0075	16.8	1.0	3	23	1031	1052	1030	1052	0.95
9	9	0.091	6.8	7.5	1.6	1	23	1146	1168	1146	1168	0.99

Sequence Information

Coding Sequence: ATGGCCTCTTCTATATATGCTACCCCACCGCCTGACTTAAATAACGAGGATACTGCCCTATCTGATGTGTCCAACAATTCATCATCAGCCGCCGTCGCCCCGTCCTCCTCATCAGTTATAAGTCGcacaacaacgacaacgacgCCAACTACCACAACAACGAccaagcaacagcaacaacaacaacaaaaggacAAACTAAATAATACATGCATCGGCGAATTCTTAGAAACGTCTTTACAAGCAACGACATCTTCCCCATCGACATCCACTCTATTAACACATTCAActttacaacaacagcactCATCGTTATCACCATATTTTTCGGCATCGATGAAATGTAGCTTTCTTAATAATACCAATAAAGATGACAATAGTTTCAATGCGAACGTACAGAGAAATCGTACAAATGCTAATGCTACAGATGACAGAGACTGTACAACGGCAATGGCTGCTGTGGCAGCAGCGGCTAATGCAGCCATGCAGTTGCAGCTCTTAGAAGCCATAAATGAGGTTGCTCAAAAGAGAAGCCAACTCTCCAATCCACATGCTTTTCCTATGGATCGTAATAAAACAGCTTCTAAAGCAACAACTTCTTTGGCTTGTAATGAACCATTTGGAACTGACAAATCAGATTCTGAGAAACTTAGCCATAAACCATATGTTGATGAAGAGTATGGATTATCGAAAATATTCTTGCCAAAATCCTTCGAACAATTAAGCAAAGCGGTTGGGTTTATTCAACCtcaccaacagcaacaagtATTTTCTGATAATGAACACATATCAGCAGAAGTGGGGGCAAAAACGTCACCATCACCAACCTTTTCAACTGTAAAGAAAGGAGCAGAAGAAGAGGAGGAGGAAGAaggtcaaattaaaattagtcaAAGAAGAATTGCGTATCAAATCTATTGCAaagaatgtggtgaaaatttCGATAacgaatttaaattaaattatcatATAATGCAGGAGCATAATCAAAAAGAACGTATACAAAACCTGACAACCAGTGACTCTGAACAAACCGCATCGGTTCAAGTGAAACAGGAACTCTCAGAAGGCggaactacaacaacaaatgatgTGCTCTCATCCTATTTAGCTAATGGCAGAAATcaatcaccatcatcattgACATGGCTGAGAGCTAGCTTATCAAGTCTCGGCTTTCCCTttactgcaacaacagctggcGGCACCTATACGCCCTTATTGGGTCTAGGTTCGGGGGGTTTCGCCACTGCCGAAAGTCTACAAAGACCCGCTTTACGTATTTTTAATCCAGAAGCATTTTGCGAACTTtgcaataaagaattttgtaataaatattttctcaaaACACATAAAGCTAACAAGCATGGCATTTTCGACAGTACAACAACTGATCTAATCAACAGCAGTCCTACAAATAGTTTGTTTGCCATGAATCACCTACTACAAATGCAaatacaacagcagcagcatttGGAATTGGAAAAATCTGATGTACTGCATAAAAATGTGGAGACAACATCTACCACTCGACAACTTCTAACATCGCCAGCAGCTCCAGCTCCCATCTACTGCGATATATGTTCAAAACGATTTACCAACATATTTGCGATGCGTCGTCATCGGGCCAAAGCGCACGAGCAGAGTCCGCATCACACttactcatcatcatcatctactACGGAAATAAAAACTGACTCTTACACTCCCCCATTATTTTTAGCCACCAATGAGaataagtcaaatttaatgaAAGATTTTCGACAAGATTTCTTTTTGGAACAAGAGGAAGTCTCTTTTACGCCACAACCACATAAGTTGTCACCGAACTCTCAACAGCAGGCTCGTGAATCCAATTTTGCTTATGACAAATTAAAACATCTTGGCGTTATTAACCCGGACGCTTTTTGCGAGTTATGTTGCAAGGAGTattgcaataaatattttttacgtaCCCATAAATGGAAGCGTCATGGCATTTTTGTGCCGCCCGATGACAACGAAAATCACAACTATCCCAAGTTACCGGTGTGGCCCTTCATGAACATGCCATTAAATCTAATGACAAGCGGAGGAGATGAAAAGTCGGTTTTATCCCAACGTCCTCAAGATAACTTAGAAGAATCGGTGCAACCTACCAAACGTATAAAGCTTGAAATTCCCGAcgaagacgaagaagaaggGCAACAAAATACAGACTCTGAAAATTCTACGGAAAAGGGTAAAAATTTGTTGGGGAGCGAAAATGCTGAAACAACGGTAGGCTTGCAGAATTTACAGAAACTTCAAACTATGATACAACAATTAACAGATTTTAGCAGTGGAGGAGGCAAACCATCGACAATGTTAAGTTGCCACATATGCGGTCAAGATGCGGAGAATCATTATGCTTTGCAAACCCATCTCATAACCGAACATAATGCAATTGCGCGAACCCAACTGGCTTTACAACCTTTGCAACCTTTACAACAAACAATGTTGAAAAAATCTCCGAACGGATCACCCGGTAATTTATCTACGCCAGTCGAAGAATTACGTTGTACGGCCTGTAATCAAGAATTTATTACTTTAAGCGAATTTCATAAACATATCGCCGAAATACATTTACTGCCTGTTATGGGGTCGGAAGGTTTCATTACGCCCGAACGTCCTATAAATAGCAACGCAGCAGCTGCAGTAGTGGCTAACCCACGGCCCCCATACTCTCTAACACCGACAAGTAGTTATTGTGAGATTTGTAACAAGGAGTTgtgcaataaatatttcatgaaaACTCATATGCAACGAATGCACGGCATAGAAATCGAAAATGGCGCACAAATTGGAGGCGTAgtgtgtaatatatgtaacaaAGAATTGTGCAGTAAGTACTTTCTGAGGGTACACAAGCACAACACACACGGTATTATTGAGGAGGGCACTCCGGCGTTACCCCATCCAACGCGGCAAAATGACTTAAATTTAGAGACACAATCATCGAAAACCCCAATAACGGAAACGGATACCGTGACCCATCGTTCAATGAGTGTAAGTCCCTTTGCCAGTGGTGCGAGTTCAAGATTAGATTCGAATAGTAGCCAACAGGAAATCTGCCCTTTGTGTACAAAACGTTTTCGCAGTTCAAAGTGGTTACGCTCGCATCTACAAAATGATCATGGCTCTGTCGGAGGTGAGACATtaaaagaaatgaatgaaGATTCTGAAAATGCAGCCAAGACTTCCAGTCCAATTTTGAAAACACCAAATGGCGCCACTTCCTTAGATAGCCCCACGGCTACACCATCGTCATCATCACAACTAGCGCAAGCTTTACATAATTTAAATGCTCAACACTTCCTCAATACCGCCAACCAAACATTGAATTCTaatcaacaacaagaacagcaaacattaaaagaaacaccaccgccaccaccaatATCACGTTTCAAGGAATACCAATGTACTATGTGTTCATTTACCACACCCTATTATGCCTTCTTGTTCATACACGAAAAAACGCATTCTATCACGGGCAACAATGGCCCAATCGACCCAAATTACAATAAACACAACAGTAACATAGTTATGCAGGATCAAGTAGGAATAGAAAATGTAAACGAAAACAATCCAAAgagtaaagaaaacaatacaaataaaattttaccaatATTATCATCATCGCCAAACATAATGAGTACTGATTATGACAAAGAAAATGAGAATAATGTGAAGGTAAAAAGTAATGAATCCAATTTGAAGGCAATTTTAAATGATACCCAACCATCAGCCGTTGTTATGAATAAAGAGAATAAGCGGTCTATAGCTGCGTCGCCCATACAATCTCTAAATCAACAATTTATGGAAGAAGTGGCTGCAAGAACTGGACATATAGCTACATACGGAATTCCTAAATTCCACGCACAACACAACAATGCTAACGAAGCTGCTGTTCAGATGCAAGCTTTTAAGGTGGAAAGCCTTCCCGAGTCCAGCGATAATAATAGGTTTATACCCGCAATTGTTTACTTACCCGTTAGAGAGCGTTTAACCGGAACTGTAAGTATAACCTTTAAATTAACACCAGCTTAA
Protein Sequence: MASSIYATPPPDLNNEDTALSDVSNNSSSAAVAPSSSSVISRTTTTTTPTTTTTTKQQQQQQQKDKLNNTCIGEFLETSLQATTSSPSTSTLLTHSTLQQQHSSLSPYFSASMKCSFLNNTNKDDNSFNANVQRNRTNANATDDRDCTTAMAAVAAAANAAMQLQLLEAINEVAQKRSQLSNPHAFPMDRNKTASKATTSLACNEPFGTDKSDSEKLSHKPYVDEEYGLSKIFLPKSFEQLSKAVGFIQPHQQQQVFSDNEHISAEVGAKTSPSPTFSTVKKGAEEEEEEEGQIKISQRRIAYQIYCKECGENFDNEFKLNYHIMQEHNQKERIQNLTTSDSEQTASVQVKQELSEGGTTTTNDVLSSYLANGRNQSPSSLTWLRASLSSLGFPFTATTAGGTYTPLLGLGSGGFATAESLQRPALRIFNPEAFCELCNKEFCNKYFLKTHKANKHGIFDSTTTDLINSSPTNSLFAMNHLLQMQIQQQQHLELEKSDVLHKNVETTSTTRQLLTSPAAPAPIYCDICSKRFTNIFAMRRHRAKAHEQSPHHTYSSSSSTTEIKTDSYTPPLFLATNENKSNLMKDFRQDFFLEQEEVSFTPQPHKLSPNSQQQARESNFAYDKLKHLGVINPDAFCELCCKEYCNKYFLRTHKWKRHGIFVPPDDNENHNYPKLPVWPFMNMPLNLMTSGGDEKSVLSQRPQDNLEESVQPTKRIKLEIPDEDEEEGQQNTDSENSTEKGKNLLGSENAETTVGLQNLQKLQTMIQQLTDFSSGGGKPSTMLSCHICGQDAENHYALQTHLITEHNAIARTQLALQPLQPLQQTMLKKSPNGSPGNLSTPVEELRCTACNQEFITLSEFHKHIAEIHLLPVMGSEGFITPERPINSNAAAAVVANPRPPYSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIIEEGTPALPHPTRQNDLNLETQSSKTPITETDTVTHRSMSVSPFASGASSRLDSNSSQQEICPLCTKRFRSSKWLRSHLQNDHGSVGGETLKEMNEDSENAAKTSSPILKTPNGATSLDSPTATPSSSSQLAQALHNLNAQHFLNTANQTLNSNQQQEQQTLKETPPPPPISRFKEYQCTMCSFTTPYYAFLFIHEKTHSITGNNGPIDPNYNKHNSNIVMQDQVGIENVNENNPKSKENNTNKILPILSSSPNIMSTDYDKENENNVKVKSNESNLKAILNDTQPSAVVMNKENKRSIAASPIQSLNQQFMEEVAARTGHIATYGIPKFHAQHNNANEAAVQMQAFKVESLPESSDNNRFIPAIVYLPVRERLTGTVSITFKLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01114595;
90% Identity: iTF_01114595; iTF_00384879;
80% Identity: -