Ofri000614.1
Basic Information
- Insect
- Ornithomya fringillina
- Gene Symbol
- Lip3
- Assembly
- GCA_963978525.1
- Location
- OZ021690.1:4743148-4757537[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.068 5 7.9 0.1 3 23 411 431 409 431 0.96 2 15 0.0082 0.6 10.8 2.4 1 23 437 460 437 460 0.91 3 15 0.46 34 5.3 0.2 3 23 465 487 463 487 0.86 4 15 0.0021 0.16 12.6 0.3 1 22 495 516 495 516 0.96 5 15 2.1e-05 0.0016 18.9 2.5 1 23 524 546 524 546 0.98 6 15 0.033 2.4 8.9 4.7 1 23 552 574 552 574 0.97 7 15 0.00025 0.019 15.5 2.8 1 23 580 602 580 602 0.97 8 15 0.66 49 4.8 0.8 2 23 1027 1049 1026 1049 0.94 9 15 0.044 3.2 8.5 0.3 1 23 1073 1095 1073 1095 0.92 10 15 0.37 27 5.6 3.6 1 23 1103 1127 1103 1127 0.92 11 15 0.0098 0.72 10.5 0.3 1 21 1169 1189 1169 1190 0.94 12 15 0.00016 0.012 16.1 0.9 1 23 1198 1220 1198 1220 0.98 13 15 7.5e-05 0.0055 17.2 2.2 1 23 1226 1249 1226 1249 0.97 14 15 5e-05 0.0037 17.7 1.2 1 23 1255 1277 1255 1277 0.98 15 15 0.0017 0.12 12.9 1.1 1 21 1283 1303 1283 1304 0.92
Sequence Information
- Coding Sequence
- ATGCATGCAGAAACTGCTCAACTGATCTCTAATCATCAATATCCAGTGGAGGAGCACACTGTACTGACCTCGGATAAGTACATTTTAACCATCTACCGTATACCTCATTCACCTAAATTATGTACTCAAAATGTAACCAACGACAAGCCCGTCGTATTTCTTCAGCATGGCATACTAAGTGCCTCAGACGATTGGATAATTATCGGTCCGGAGAACTCACTGGCCTTTCTATTTGCCGACATGGGCTACGATGTTTGGTTGGGTAATGCTCGCGGCAACACGTATTCTCGTCAGCACAAATACAAACATCCCGATTCATCGGATTTTTGGAATTTCAGTTGGCATGAAATTGGTGTTTACGATTTGGCTGCCATGCTGGATTATGTGTTGAATGAAACGAGACAGGAGTCATTGCATTTTGTTGGACATTCACAGGGCACTACTACGTTTTTTGTACTAATGACTCAACAGCCCTGGTACAATGACAAAATGAGAACGGTACATCTGTTGGCCCCGGTGGCATTCCTAAGAGATCACTCCTTTCTTTTATCGAAACTTGGCAAAATATTGCTGGGCTATCCGACTTTTTTAAGTATGTTTTTCACCAGCCTGGAGTTATTTCCCACCACTAGCCTACAAAAACTGCTCTGCGGGTATATCTGTTCACCCAACGCCAGTTTAAGTTTTCTGTGTTCGGGCATATTGGACTTTGTTGGTGGCTGGGgtacaaaacatttaaattatACTCTACTGCCACACTTGTGTGAGACGCATCCGGCTGGCGCTTCCACCACCCAGATTATACATTACATGCAATTGTACAATTCGGGGGATTTCAAACAATTCGACTATGGCATGGATgccaatttaaaaatataccaaCAGGAGACTCCGCCCCATTACGATATGGGCAACGTCAATACTTGCGTTCATTTGTATTATAGTGACAACGATTATATATCGGCTGCAGCAGATGTAGAACACTTGGCAACTCTGCTACCGTGTGTTGAACTCATCCGTATACCGTACGCTGATTGGAATCATTATGACTTTTTATGGTCCATCAACGTGAAGGAAGTGATTAACGATCGTATTATTGAGAAAATTGAGAACCATGAACGAATTTTCAATCACTCTGACGataatatatcatataaaGTGACCAACAATTCAAGTGTAAAAAAAGCTACTTTAGTGAAACTGTCTACGGAGGGTGTACCAAAACTGTTTTGCCCTGTCTGCAGTAAGGCTTTAATATCTTTGAACGGTTACGTAAAGCACGTTAAAAAACATGAACCTCCCGGTGGTTTTATTTGCCGTTACTGTGAATCTCGCTTCTGCACAGAGGATGAATTAAGGCGACATCGCGATGCCAATCACATGACGTTAGCGTGTCGCTTATGCAAAGCGGTCAACTTTACAAACGAAGAGGACTACCGCACACACATTCGTGTAGAACATAATGGCATCGATCGGGAATTGTTTAAATGCAACAAATGTGGAGCCGAGTATAAAACGGTTGATCCCTACCGGCGTCATATGAGCACCGAGTGTGGCACCATCAAACCTTACAAATGTGATCAGTGTTCCATGTCGTTTGTCACCAAATACAACCTGAAGCAGCATAAAGAATCACACAGCGGTGCGTCCAAGTACTGCTGCAGCTATTGTGGGAAACATTTCTTACAAAAAGGTCGTCTAGTAGAGCATGAACGTTCGCACACGGGCGAAAAACCGTATAAATGTGATGTGTGTGGTAAATGTTTTGCTCATCGGGAAAGTATAGTCACGCATACCACCATACATACGGGCATTCGTTTGGTGGAGTGTAGATGCTGTCAGTCTCGGTTTTCCTGTTACTCCAACTTAATAAAACATCGCCGAACACGTCCAGATACCTGCGGTTTGCCGCAATACGATCCACCCAAGAATCGTGTACGCAAACACACTTCAAGAATACCAGCCACCGTTAATCCCACGTCCGAGATACGGGTGAGCAATGTTAACAAAATCATTAAACCCGACGATCAACAGAAGTTGAGCAATTTAAAGAAGGAGAACTGCTCCACCAGAAAATCCAATAAACCGCAAACGGTTGCCAAGAGAACTCGTAAAAAGAAAATGGTGACCGCCAGTGCAGAAAGTGATCTGGCGACAAACAACGAAGGCAGCAATAACGCTGAGAGAGTGAagctcaaaaaatatttaggaCCCTCCCCCTCCGAAGCTGAGAATACTAAAACTGAGCCGCTGGCAAATTGCGGTGATAGTGTGGCGCACCACAATAATGATGCAGAGTTTTCTCGTTTGGACTCTTTGAACGATTCGGATGTGGATGATGAAAGAAAGGATGAATTTGGATCACTCGATCCTGTACCTTCGGAAGCAGaaattaaacaagaaaacGATGATCTGGAACTAGCGGGTAGAGGTGGTAAGAGGCCAGCCCTTGTAAAAGTGTTGCATGACTTTGAGTGCACCCTGGTGCATAGCATTCCTGCAACGACCGACATCAGCGCCGTGCAAATCAAATCCGAAGAAGTGAACGAATGTGGAGTGATGCAGAATTGTTTGAGATTCCTGGGCGATTGCCACCTCGAAGATGACATTCCGCTGGAGCATTatcaaagaaacaaaaacaaattaatcgaGCACAAGCAGGTGTTGGACATTTTGGAAGAAACCGAactgatactgatcaagaacgAGGAAAACAATGTCCAGGTGCCCTTGGAGGAAGACATACTAAACACGCAGCCGGATGTGAATGGTGACTGGGATGGTTGTACCGTACTGCTGGAGGATGTGACCAAACATTATCCCGAACTCAAGGAGCGTGCTTCAATAAAAGTATCCCGTAACGCCAAAGCGACGAGAAGGAAatgtcaaaataaaaaaattaataaaaattcggCCATTTTACGATTCGCAACGTCAAGGGCTTTGAAGCATACGGCGACGAGAGACAACGAGAGGAAACTGGAAAAGGAGCGCAAGCGATCGTTTCGCTTGGCGAAAATTTCCCAAAGGGAGCTGAAGGAGCGCTTGCAGTTGACCAAAAAGGTGGAGAGCCATTGGCAGTGTCCGCACTGCATTAAAATCTACTATATGCGCAAACCCTATGAAAAGCACCTGAGAGACGATCACCAGCGACCGGAGCAAGAAATACGGGAGATTTTCAAGAGGGACCACACATCCGTAGCGACTGAAGAGGCCTTCAAGTGTCCGATATGCGATAAAATCTATTTGATGGAGAAGCGTTTAAAAGATCACATCGTGCGGCATGGCCCGGATGGCAAGCTGCTGTACAAGTGTCCGTGCTATTGTAATTTGTACTTTGGTACGCGAGACGAGGCCACCAAGCATGCCCATCTGCAGCACAAGGACATGTTGTGGTGTGAGTTGTGTCAGAAATTTATGACCGGGCATGAGGCACTCAAGTCTCATAACGCCCGTAAGCACGGCCAGGCAAAGGATGCAGTCAACAACAGTACAAAAAGGAATTTCATTTGTGACAAGTGTGGAAAGAAGTTCCTGGGTCGCACCCAACTGACGGACCATGTCCGCTCGGATTGTGGCCGCTTGCCCATCTACCAGTGCACGGAGTGCGGCAAATGTTTGACCACGGCGGGCATTTTAAAAACGCACATGCTACTGCACAAGAACGAGTGTCCCTTCAAGTGCGAGCAGTGCGGTAAGGCGTTCAAAATTAAAGCCCAGTACAAGTCGCACCTGAAGTATCGCCACAGCGACGAGAAGCACTTCAAGTGTCACTTATGCCCCAAAGCGTATCCGTACCGGGAAAGCCTCTTGACTCATATGACCGTGCATACGGGTATTAAGCGTTTCCTGTGCAATGGTTGCGGTAAACGCTTTACGTGTGTTTCCAATTTGCAAGCACATCGCAAGGTGCAGGCGGACACCTGTGGCCTGTTACCTCTGAATGCCAAAGCCACCCAGTACATGGGAGTGCAGAAGGGTAACCTGTTAATGGGAGCTAAACCGGAGGCTGGCTTGGATTATGTGGAAACCAATACACTGGTGGCCAGGGAGGTGTTAAATCGCAACCAGCCCATGGCCCAAGAGCTGAACAACAGCCCCTCAAATGATGATTTGCCATCCATACCTGCACCACCAATCATGCCAGATGCACAATTGTTGGAGACGGTCCTTCCCCGAAATCATCCCGGTCCAGCTACTGAGTTAATTCACACATCGCGCGGTTACTCgtgtaatgaaattattattaaataa
- Protein Sequence
- MHAETAQLISNHQYPVEEHTVLTSDKYILTIYRIPHSPKLCTQNVTNDKPVVFLQHGILSASDDWIIIGPENSLAFLFADMGYDVWLGNARGNTYSRQHKYKHPDSSDFWNFSWHEIGVYDLAAMLDYVLNETRQESLHFVGHSQGTTTFFVLMTQQPWYNDKMRTVHLLAPVAFLRDHSFLLSKLGKILLGYPTFLSMFFTSLELFPTTSLQKLLCGYICSPNASLSFLCSGILDFVGGWGTKHLNYTLLPHLCETHPAGASTTQIIHYMQLYNSGDFKQFDYGMDANLKIYQQETPPHYDMGNVNTCVHLYYSDNDYISAAADVEHLATLLPCVELIRIPYADWNHYDFLWSINVKEVINDRIIEKIENHERIFNHSDDNISYKVTNNSSVKKATLVKLSTEGVPKLFCPVCSKALISLNGYVKHVKKHEPPGGFICRYCESRFCTEDELRRHRDANHMTLACRLCKAVNFTNEEDYRTHIRVEHNGIDRELFKCNKCGAEYKTVDPYRRHMSTECGTIKPYKCDQCSMSFVTKYNLKQHKESHSGASKYCCSYCGKHFLQKGRLVEHERSHTGEKPYKCDVCGKCFAHRESIVTHTTIHTGIRLVECRCCQSRFSCYSNLIKHRRTRPDTCGLPQYDPPKNRVRKHTSRIPATVNPTSEIRVSNVNKIIKPDDQQKLSNLKKENCSTRKSNKPQTVAKRTRKKKMVTASAESDLATNNEGSNNAERVKLKKYLGPSPSEAENTKTEPLANCGDSVAHHNNDAEFSRLDSLNDSDVDDERKDEFGSLDPVPSEAEIKQENDDLELAGRGGKRPALVKVLHDFECTLVHSIPATTDISAVQIKSEEVNECGVMQNCLRFLGDCHLEDDIPLEHYQRNKNKLIEHKQVLDILEETELILIKNEENNVQVPLEEDILNTQPDVNGDWDGCTVLLEDVTKHYPELKERASIKVSRNAKATRRKCQNKKINKNSAILRFATSRALKHTATRDNERKLEKERKRSFRLAKISQRELKERLQLTKKVESHWQCPHCIKIYYMRKPYEKHLRDDHQRPEQEIREIFKRDHTSVATEEAFKCPICDKIYLMEKRLKDHIVRHGPDGKLLYKCPCYCNLYFGTRDEATKHAHLQHKDMLWCELCQKFMTGHEALKSHNARKHGQAKDAVNNSTKRNFICDKCGKKFLGRTQLTDHVRSDCGRLPIYQCTECGKCLTTAGILKTHMLLHKNECPFKCEQCGKAFKIKAQYKSHLKYRHSDEKHFKCHLCPKAYPYRESLLTHMTVHTGIKRFLCNGCGKRFTCVSNLQAHRKVQADTCGLLPLNAKATQYMGVQKGNLLMGAKPEAGLDYVETNTLVAREVLNRNQPMAQELNNSPSNDDLPSIPAPPIMPDAQLLETVLPRNHPGPATELIHTSRGYSCNEIIIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -