Basic Information

Insect: Ornithomya fringillina
Gene Symbol: Sry-delta
Assembly: GCA_963978525.1
Location: OZ021691.1:18088455-18089648[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.36 26 5.6 0.1 1 17 56 72 56 73 0.92

2 8 6.3e-05 0.0046 17.4 0.3 2 23 171 193 170 193 0.93

3 8 0.00049 0.036 14.6 0.1 1 23 198 220 198 220 0.97

4 8 9.4e-06 0.0007 20.0 2.5 2 23 227 248 227 248 0.97

5 8 0.00041 0.031 14.8 1.2 1 23 254 276 254 276 0.98

6 8 3.4e-05 0.0025 18.2 1.9 3 23 285 305 283 305 0.96

7 8 0.00016 0.012 16.1 8.2 1 23 312 334 312 334 0.97

8 8 5.6e-05 0.0041 17.6 0.1 1 23 370 393 370 393 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.36	26	5.6	0.1	1	17	56	72	56	73	0.92
2	8	6.3e-05	0.0046	17.4	0.3	2	23	171	193	170	193	0.93
3	8	0.00049	0.036	14.6	0.1	1	23	198	220	198	220	0.97
4	8	9.4e-06	0.0007	20.0	2.5	2	23	227	248	227	248	0.97
5	8	0.00041	0.031	14.8	1.2	1	23	254	276	254	276	0.98
6	8	3.4e-05	0.0025	18.2	1.9	3	23	285	305	283	305	0.96
7	8	0.00016	0.012	16.1	8.2	1	23	312	334	312	334	0.97
8	8	5.6e-05	0.0041	17.6	0.1	1	23	370	393	370	393	0.96

Sequence Information

Coding Sequence: ATGGAATCTATCCtatgttttttatgttcaAAAGATAGCAGACAAATTGTAGAGTTTTATGATGTGGAGTCTGCAGTAGTACCAGCATCGCAGAAGCCACTACATGTCGTATTGCAGCATTTGGCcaattgtattaaattcaaattaatcTTTCAAAGAGGAACGTTTGTTTGTAGTGAATGCTTTAAGGAAATCAGTGATTATGATAATTTAATGCTCAATTTGCTCACATCTCAAAGAGTACTAACTGGCCGATTACAAAGCGCCTTAAACGATAAGCCGGAAGAGGTTATTTCAGAAGCTGGTCAAGATTTTGAAATAGAATTAGAAGTTGAAGAAGGAACGAATTTAGAAGACGCATTTAACCCTGAATTAGACACTAAAGAAGAATTGATAGAAGTCGATGATGACGTTATTGAAGAGGAATTCATAGATGAAGGATCTAATAGTACCAACGCTGCGTCTAATGACGATGTTGAATATGTACCAGAACGTAAACGTTGTACACAGGAGTGCGTTGTCTGTGGAGCAACATTCAGATCGAGATTTCAACTTCAAAATCACATTAGTGAAACTCATAATACAAAACAGtttatttgcaaaatttgCGGTGTTGCCCGAAAGGATGAGGAGTATTTGGAATTACACATGAATTTGCATGAAGGCAAAACAGAAAATGAGTGTCGTTATTGCACAAAACGATTTTCTCGTCCAGTCAATACTCTAAGGCATATGCGAAAGCATTGGGACAAGAAAAAGTTTCAATGTGAAAAATGTGGCGAACGTTTTTCTTTAGACAACATGCTGTACAATCATCGTTTGAGGCACGAAGCAGAAGAAAACCCTGTAATTTGCAGCATTTGCAACCAATCATTCAAGTCACGTAAAACATATAATCATCACATACTGATCCATCAAGAGAATCGACCTCGACACCATTGTCACCTATGTCCGAAATCCTTTACTGAACGATACACCTTGAAAATGCATCTAAAGACTCATAATGGTGCaaataacattttatcaaCAGATGAAACCCAAACTGGTGAAATTAAGGAAACTGAAGCCgctataataaatatgttagttgaaaatgttgataaagattttcaatgtgttatttgtaatataaaatttgaatcgaaaGCAGCACTTGAACAACATTTGCAAGAGGAGCACGATGTTATACCCtaa
Protein Sequence: MESILCFLCSKDSRQIVEFYDVESAVVPASQKPLHVVLQHLANCIKFKLIFQRGTFVCSECFKEISDYDNLMLNLLTSQRVLTGRLQSALNDKPEEVISEAGQDFEIELEVEEGTNLEDAFNPELDTKEELIEVDDDVIEEEFIDEGSNSTNAASNDDVEYVPERKRCTQECVVCGATFRSRFQLQNHISETHNTKQFICKICGVARKDEEYLELHMNLHEGKTENECRYCTKRFSRPVNTLRHMRKHWDKKKFQCEKCGERFSLDNMLYNHRLRHEAEENPVICSICNQSFKSRKTYNHHILIHQENRPRHHCHLCPKSFTERYTLKMHLKTHNGANNILSTDETQTGEIKETEAAIINMLVENVDKDFQCVICNIKFESKAALEQHLQEEHDVIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00384776;
90% Identity: iTF_00384776;
80% Identity: iTF_00384776;