Ofri013610.1
Basic Information
- Insect
- Ornithomya fringillina
- Gene Symbol
- -
- Assembly
- GCA_963978525.1
- Location
- OZ021693.1:23722612-23727231[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.021 1.5 9.5 2.4 1 23 23 45 23 45 0.98 2 19 2.2e-05 0.0017 18.8 2.0 1 23 163 185 163 185 0.99 3 19 0.0021 0.16 12.6 3.4 1 23 191 213 191 213 0.97 4 19 6.8e-06 0.0005 20.5 2.2 1 23 219 241 219 241 0.96 5 19 8e-06 0.00059 20.2 1.1 1 20 247 266 247 269 0.93 6 19 0.0041 0.3 11.7 0.1 1 23 275 297 275 297 0.98 7 19 0.00026 0.019 15.5 3.7 1 23 303 326 303 326 0.97 8 19 0.00012 0.0086 16.6 1.1 1 23 428 450 428 450 0.97 9 19 0.0015 0.11 13.0 3.4 1 23 456 478 456 478 0.98 10 19 0.00018 0.013 16.0 0.6 5 23 488 506 484 506 0.91 11 19 0.00038 0.028 14.9 2.5 1 20 512 531 512 534 0.93 12 19 3.3e-06 0.00024 21.4 0.7 1 23 540 562 540 562 0.97 13 19 4.5e-05 0.0033 17.9 0.6 1 23 568 591 568 591 0.98 14 19 0.0036 0.26 11.9 0.3 1 23 720 742 720 742 0.96 15 19 0.025 1.8 9.2 3.5 1 21 748 768 748 770 0.93 16 19 3.2e-06 0.00024 21.5 3.1 1 23 776 798 776 798 0.96 17 19 0.00023 0.017 15.6 1.6 1 20 804 823 804 826 0.93 18 19 3.4e-06 0.00025 21.4 3.0 1 23 832 854 832 854 0.97 19 19 0.00024 0.017 15.6 0.4 1 23 860 883 860 883 0.98
Sequence Information
- Coding Sequence
- atgtttaatgttgaaaataataaagtgtgcggcattatatgtataaatgagaaaaattatCTCGTGTTTCGATGCAATCATTGTAACCATGCCATAGATTCATTTGACGCTTTGACCACCCACTTAACCATTCATTACGACGAAGTAAGAGTAGAGAAATGTGTTGACTTGGTGGAAGGTGAGACATATCTGGAGTTTTCCGAATTGAATGAATCTCAGAGCCGTTGTAAAGAGATGCCTTTGAAATTGCAATTTATAGAAGAACAAGACACCATTATAGAATGTATGGAACCTGAACATAGCTGTGAAGAAATAAATGCAACGTTTTTAAATACAGATAACTCCGCACAATTTGATTTTAgtgaaaacaataatattcCTACAGTACATGATGCAACCACTCTTCAAAAGGATGCGCATTTATTGGAACATAACACTTCCAGGCGCAAAAAGAAACCACATTCTAAAGAAGAGACGTCCACtgcatataaatgtaaaatgtgCGGCTATGCTTATAAggataaatacattttgagAAAACATATGCTGCGTCATTCGGGTCGAAAGGAATTTTCCTGTTCTCAGTGTccgaaaatgttttatacacGGACTGAGGTGAAACTTCACGAACGCCATCATAGTGGAGAACGACCGTACTTGTGTACATTTTGTGGTAAAACGTTTGTTACAACCAGCAATATGTTTGAACATATGAAGCGCCATAAAAATATACGACCTTATAAATGTGAAGTGTGCGGTAAGTCCTTTTATGAGAGGGCACATTTACGCGATCATATGCCAAGTCACAGCGATGAGCGTCTATTTCCTTGTCCCAAGTGTTCAGCTGCATTTAAATTGAGAAGAATTCTAAGAGCTCACATGCAAATCCATTTAAATAAACGTGAACATCGTTGCCATTTATGTGATGCTTCATTTAATCAACGACCTGCTCTAAAATCACATCTCAAATCGAAACATGgAGCCTTTAcagaagaagaacaacaagACACACTGGGCCTAGAATACAGTGGAGTGGAGGAAACTGAATTATTGGAAAGCGATATAGAAGAAATTCCAATTGAAGACAACTTTGATAGCGAAACGATTACAACAATTATAGAACCTGACGAATGTATAGAAATTGTCGAATATGAAGAATCTTCGGAAAAGCCTATTGAATATTCAGAATGTTCTTCAGAACCAAAgGAATCATCTTTAGTGACAGAGCCTAAAGCTGTAAAAAACAAGGGGAGACCAAGTTCGAAAAGGTGGTCCAATGAATTTCAATGTAAAGTGTGTGGTTCCAGCTTCAAGGATAAATATGTTTTGGCAAAACATAGCCTTCGGCATACTGGAAAAAAGGACTTTTCCTGTTCTCAATgttctaaaaaattttacacacgTACTGAGGTGAAACTGCATGAACGGCGTCATAACAATGAACGACCCTACTTGTGTATATTCTGCGGCAAAACATTTGTTACGACTAGTAACTTGGATGAACATATAAAACGACATGAAAGCGTACGTCCGCATAAATGTGATATATGTGGCAAAGGTTTCCATGACAAAGCTGAATTGTCACATCATCGTCCAGTGCATAGTGATGAGCGTGCCTTTGCTTGTGAAAAATGTCCATCAACTTTTAAGCAACAAAAAAGCCTACAAGCCCATATGAAAATCCATCTAAATAAACGGCAATATCGCtgtaaattgtgtggtgcTTCATTTAATCAAGGTCCCGCTCTTAAATCGCATCAAAAAACAAAGCATCGTAATGATCAGAATGCAAattcttttgaaaatttgaCAACGCACTTGACTGATCACTACAAGGAAGTTAGAATTGGAAAAGATTGTGATATAGAACAAGAAGACACGCGAACAAGCAGCTCAGAAATGATGACCTTAGAATGTATGGAATCATGGGAAAGTTTTAGTCAAAAAGAGGATTATACTCTTGAAGGCAATGTTGATATGGAAAGCTGCTCAAAAAATGTGGAAGGTGAGGAGAGGAGCGAACATGAAAACTTTTACGATGTCATTAATGCAGAAGAAGAGCATCCTGAAATTGCCGAAGATTCTATCCAAACTAAGGAATATCCATTATTAGATTGCAACGAAAAAGTTGCTGATGACGATGAAATGTTAAATCCCTTTCAGTGCACAGTGTGTGGTTCTGTTTTTAAGGATAAGTACATTTTGGGTAATCATGTTCTGCGTCATACTGGTAAAAAAGACTTTCCCTGCTCTCAGTGCCCAAAGAAGTTTTATACACGAACTGAGGTAAAATTGCATGAACGCTGCCACAATAACGAACGGCCGTATTTGTGCACGTTTTGCGGTAAAACCTTTGTCACAACCAGTAATATGTTTAAGCACATGAAACGCCACAACACAACGCGACCACATAAATGCGACATCTGTGGCAAAGGCTTTCATGATAAGCCTGACTTGTGGCATCATCTTCCCATTCACAGTGATGTACGGGCTTTTTGTTGTAACAAGTGTCCAGCTACATTTAAACAACAGAAGAGCTTACAGGCCCATATGAAGATTCATCTTAATAAACGGGAATATCGCTGTAAATTGTGCGGCGCTTCTTTTAATCAGGGTCCCGGCTTAAGATCACATTTAAAATCTAAACATCGCATCGAAGAGCACACACATATGGATTAA
- Protein Sequence
- MFNVENNKVCGIICINEKNYLVFRCNHCNHAIDSFDALTTHLTIHYDEVRVEKCVDLVEGETYLEFSELNESQSRCKEMPLKLQFIEEQDTIIECMEPEHSCEEINATFLNTDNSAQFDFSENNNIPTVHDATTLQKDAHLLEHNTSRRKKKPHSKEETSTAYKCKMCGYAYKDKYILRKHMLRHSGRKEFSCSQCPKMFYTRTEVKLHERHHSGERPYLCTFCGKTFVTTSNMFEHMKRHKNIRPYKCEVCGKSFYERAHLRDHMPSHSDERLFPCPKCSAAFKLRRILRAHMQIHLNKREHRCHLCDASFNQRPALKSHLKSKHGAFTEEEQQDTLGLEYSGVEETELLESDIEEIPIEDNFDSETITTIIEPDECIEIVEYEESSEKPIEYSECSSEPKESSLVTEPKAVKNKGRPSSKRWSNEFQCKVCGSSFKDKYVLAKHSLRHTGKKDFSCSQCSKKFYTRTEVKLHERRHNNERPYLCIFCGKTFVTTSNLDEHIKRHESVRPHKCDICGKGFHDKAELSHHRPVHSDERAFACEKCPSTFKQQKSLQAHMKIHLNKRQYRCKLCGASFNQGPALKSHQKTKHRNDQNANSFENLTTHLTDHYKEVRIGKDCDIEQEDTRTSSSEMMTLECMESWESFSQKEDYTLEGNVDMESCSKNVEGEERSEHENFYDVINAEEEHPEIAEDSIQTKEYPLLDCNEKVADDDEMLNPFQCTVCGSVFKDKYILGNHVLRHTGKKDFPCSQCPKKFYTRTEVKLHERCHNNERPYLCTFCGKTFVTTSNMFKHMKRHNTTRPHKCDICGKGFHDKPDLWHHLPIHSDVRAFCCNKCPATFKQQKSLQAHMKIHLNKREYRCKLCGASFNQGPGLRSHLKSKHRIEEHTHMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -