Ofri009373.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ornithomya fringillina
Gene Symbol
lolal
Assembly
GCA_963978525.1
Location
OZ021692.1:2895765-2902929[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.3e-19 5e-16 58.2 0.0 2 45 613 657 612 657 0.97
2 2 4.6 9.7e+03 -3.5 0.9 3 11 690 698 690 701 0.81

Sequence Information

Coding Sequence
ATGTCAGTCCAACAGTTTTGTTTGCGTTGGAACAATCATCAACCGAATTTTATATCGGTGTGTTCCTCATTACTCCACAATGGTACATTAGTTGATGTTACTTTAGCGGCTGAAGGTAATCAATTGCAGGCGcacaaaattgttttgtcaGCATGCAGTTCATATTTTCAGagTCTCTTCACAATGAATCCCTGTCAGCATCCTATTGTCATATTAAAGGATGTTCAGTATGATCATTTAAGGACAATGGTTGATTTTATGTACTATGGTGAAGTGAATGTGTCGCAAGATCAATTGCCACACATCCTTAAGACGGCGGAAATGTTAAAAATCAAAGGACTCGCTGAAATGCCCACGGATCCAGCTAATCTCATAAGATCTGACAGTAAATCCGCGAACGATACCACCGAATTAGTTGGCACAGCAGCGAGTACTAGTGCTCCCACAAGTAATAGTGGAGGTGCTGGTGGTGGTAATACCAATAGCAATGGCGGTGGTCTTGTAAATAGTGGCAGTACCGGTTTAAGCGGTACTTTATGGTCCAACTCCGAGTCACAATTTCATGCGCAACAGCAGCCgcaacaacatcaaaatcaACAATCAGCTCAGCACCAAACACAGCCGCAACAACATCACCAACAattgcaacagcaacaacaacatcataatcaacagcaacaacatcaacaacaacaacaactgcataCACAACTTCAAAATAGTCAAACGCAAATATCACaacagcaccaacaacaacaacagcagcagcagcaacaacaacatcatcatcatcatcagcaaatTAGGCGTACACCATCACCACTGGGAGCCGGTGCATCTCCAGCTGCCCGACGAAAACGTATACGTAAATCTTCAAATAACGGTTCTGGTGAACGAAACAATTCAGACGATCAACATAATAGCGGTTTGGAAACTGGTCCGGGTGGTGGTTTAACTTTATCACAAATGAACCAAATGTCTTTTGGTGGTGGAGCTAGTACAAGTGGTCTTAGTGGTTTGGCCACACACTCATTGCATACCGCCAAATTGTTAAAGGAGGCAGCCAACAATGATATGGAAACTCATCCACAAGATTCTGACAGTTTGGACGATACTCATGGCCACGTACATATTCAAATTAAGCCAGAAGTTGATATTACGGGCATACAACAATCGATACCATTGGATATATCAGGCGCTACAACACCATCTGAACATGATGCACCCAACACACAATCAGCTCATTCAGGTTTGCAATGGACAGTCGTTGAATCGAATTATTCGCGCTTTTCTCTGGCATCTTGTCCCACTAATTTAATTGGTAATGCGGCCGGCAccacaacaaataataataataataacaacaacaacagcaacaacaacaatcaaaattCAAATCCGAATAATGGCAATGCTGTTAACGAACAGCAGTcgcagcagcaacaattacaacaacaacaacaacagcgtcAGCAACAGGATTCGGTAAATAATccacagcagcaacaacaacagcagcagcaacatttacaacaacaattacaatatcaacaacaacaacaaaattcctCCTATTCACCGCAAATAATAACGGTTAGCGGTTATTCGAATgcagcagctgctgctgctgctgtggcTGCTGCACAAAATCTTTCATCGCCGTCACCGAATGATGCCATGGTACAATCGGTATATAGTCAGGGTCCAACACCATCACCCTCACCAATTGGCAACACCTCAGGCAGCAGTTCAAATAATATGTCCACCACAAATGCCGCCAACAGTACTAATAACGGTAATAATGTAAAACGTAAACGTTCGGTAAATCCGCAGGGTGATGAAAACTTCATAAGAGCCTTGGAAGCGGTACGTTCAGGTGGTATTGGTTTTTGTAAAGCGGCACGTCTATATGGTGTTAACAATCGTACATTGTGGCTGGAATATAAGAAGCGGGGCTATCCGGTTTCAAGGCCTAGCATAAAATCACGCGTTGTTAAACAAGAACCGAATCTGTCGCCATCACCGACACCGCCCACCAATACTGCCGACGATACAAACGAAAATTATGAACATATGGCGGCTGCGGTGGCTGCAGCCCAAACAGCTGCTTTAAATATGCAAATACCACCAACATCCGATACACCAACATCGTCACTGATGTGTACACCACATCATGGCAGCAGTGCAGCAGCTAGTGGTGCCGGTAGTCATCCCACCATGGGTGTAATGAGTTTCCTCGACACTCGTCCCATGGATTTTCACGCTAGTCTACACTCCATGTCCCGTCAACGGTATATTGATGCGACTGGGGCCAATGGCGGTACAAATGCTACGGGTACAATAAATGTTAATCCGGCTGCAGCTGTCAATTTGCCGGgcatcaatttcaattcaatatag
Protein Sequence
MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGNQLQAHKIVLSACSSYFQSLFTMNPCQHPIVILKDVQYDHLRTMVDFMYYGEVNVSQDQLPHILKTAEMLKIKGLAEMPTDPANLIRSDSKSANDTTELVGTAASTSAPTSNSGGAGGGNTNSNGGGLVNSGSTGLSGTLWSNSESQFHAQQQPQQHQNQQSAQHQTQPQQHHQQLQQQQQHHNQQQQHQQQQQLHTQLQNSQTQISQQHQQQQQQQQQQQHHHHHQQIRRTPSPLGAGASPAARRKRIRKSSNNGSGERNNSDDQHNSGLETGPGGGLTLSQMNQMSFGGGASTSGLSGLATHSLHTAKLLKEAANNDMETHPQDSDSLDDTHGHVHIQIKPEVDITGIQQSIPLDISGATTPSEHDAPNTQSAHSGLQWTVVESNYSRFSLASCPTNLIGNAAGTTTNNNNNNNNNSNNNNQNSNPNNGNAVNEQQSQQQQLQQQQQQRQQQDSVNNPQQQQQQQQQHLQQQLQYQQQQQNSSYSPQIITVSGYSNAAAAAAAVAAAQNLSSPSPNDAMVQSVYSQGPTPSPSPIGNTSGSSSNNMSTTNAANSTNNGNNVKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPTNTADDTNENYEHMAAAVAAAQTAALNMQIPPTSDTPTSSLMCTPHHGSSAAASGAGSHPTMGVMSFLDTRPMDFHASLHSMSRQRYIDATGANGGTNATGTINVNPAAAVNLPGINFNSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00384661;
90% Identity
iTF_00384661;
80% Identity
iTF_01115101;