Basic Information

Insect: Ornithomya chloropus
Gene Symbol: -
Assembly: GCA_963971445.1
Location: OZ020530.1:50255475-50257090[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.4 1.1e+02 3.9 0.0 1 15 254 268 254 271 0.75

2 5 5.4e-06 0.00045 20.9 1.0 1 23 287 309 287 309 0.98

3 5 6.7e-05 0.0056 17.5 1.5 1 19 315 333 315 337 0.91

4 5 2e-05 0.0017 19.1 0.2 2 23 344 366 343 366 0.96

5 5 0.0013 0.11 13.4 2.9 1 21 372 392 372 392 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.4	1.1e+02	3.9	0.0	1	15	254	268	254	271	0.75
2	5	5.4e-06	0.00045	20.9	1.0	1	23	287	309	287	309	0.98
3	5	6.7e-05	0.0056	17.5	1.5	1	19	315	333	315	337	0.91
4	5	2e-05	0.0017	19.1	0.2	2	23	344	366	343	366	0.96
5	5	0.0013	0.11	13.4	2.9	1	21	372	392	372	392	0.93

Sequence Information

Coding Sequence: atGGAAAGTTTGTCGTTGTACGAAATACATAAAGTTTGCCgaatttgcttaaaaaatgacATTCTCGTGTCCATCTACAGTCCAACATTTCCTATACGGCCTATAGAAATGCTAAggaaattacaaatatttaaaTTACCAATCGATGATAATCTGTCTACATTACTATGCCAGTCGTGTTTGTATCGCTTATTGGatgcttacaatttacaacaattagCAGAGTCTTCAGAACAACGCTTAAAAGAATATCTGGGCTTAACCGTAAAGCTAAACAATACCAGCATTGCAACAGAGCTGCCCAATGCCATTAATTTGCCTGATTTAAGTGAAGCAGATAAAGGTGACACTAGGGCTGTGTCGGCAAACATATACGATAATATCTATGATATATTTGATCGCAATGATGTTACTTCTAATGATATAGTAGAAGTGGTGGGCAATGATGATGTAGATCTATTGAATGATGTTGAAATTGATGTTAGCAGCTTAACCCGTTCCGAGGTCGATGATAACACCTTAAGTGATATGTTCATGCAACGAAATGATCGTTTAATCAAATATCCAATGGAATCGCCGTACATGAAGGACACCCATAAAGTTGGCGACATCCCCAAACATTCAAAATGTAAAGAAGTTTTAGGCAATGAATATAAATCAGATGCACATACACTGGGTCAATGTTTGGAATGCGATAAACTGTATCATTATGCAGAATGCTCAAATAGTTATGCGTTCATGCAACCGACAGAGAATGCTTTCAAGTGTAAAATTTGTCCGGTACAATTGAGTGAAGCCGCCACATTGCAAATGCCTGAAAGGCATACGTTACTAAACGATGCACCACTTGGACGACGTTATCAGTGTGAAATATGTGCAGTCTTCTTTACAACGTCAAGTAATTTGAAAGCCCATAAATTTACTCATTGTGAACAGCGCAACTTTCTGTGCAAACAATGTCAACGATCGTTTAAATCGCAAAGAGACTTGCGCCGTCACGAACCCAtgcataaaataattaaagatcTAATTTGTACTGTGTGCGTGAAAGCGTTCACCAAGAACAAGTACCTGAGAGCTCACATTCTGACCGTACATCGCGGAGTTAAGCGACACAAGTGCAGTGAGTGCGACAAAATGTTTGGCAAACGTTCCAATTTAATATGTCATTTAAGGTAA
Protein Sequence: MESLSLYEIHKVCRICLKNDILVSIYSPTFPIRPIEMLRKLQIFKLPIDDNLSTLLCQSCLYRLLDAYNLQQLAESSEQRLKEYLGLTVKLNNTSIATELPNAINLPDLSEADKGDTRAVSANIYDNIYDIFDRNDVTSNDIVEVVGNDDVDLLNDVEIDVSSLTRSEVDDNTLSDMFMQRNDRLIKYPMESPYMKDTHKVGDIPKHSKCKEVLGNEYKSDAHTLGQCLECDKLYHYAECSNSYAFMQPTENAFKCKICPVQLSEAATLQMPERHTLLNDAPLGRRYQCEICAVFFTTSSNLKAHKFTHCEQRNFLCKQCQRSFKSQRDLRRHEPMHKIIKDLICTVCVKAFTKNKYLRAHILTVHRGVKRHKCSECDKMFGKRSNLICHLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00384854;
90% Identity: iTF_00384854;
80% Identity: -