Ochl013283.1
Basic Information
- Insect
- Ornithomya chloropus
- Gene Symbol
- -
- Assembly
- GCA_963971445.1
- Location
- OZ020531.1:17856488-17861918[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 1 10.3 2.7 1 23 81 103 81 103 0.95 2 11 0.012 0.99 10.4 6.5 5 23 116 134 108 134 0.92 3 11 0.00016 0.013 16.3 3.4 1 23 272 294 272 294 0.98 4 11 0.00083 0.068 14.0 10.5 1 23 300 322 300 322 0.96 5 11 0.00014 0.012 16.5 5.6 1 23 328 350 328 350 0.98 6 11 0.13 11 7.1 0.4 1 10 356 365 356 368 0.93 7 11 1.8e-05 0.0015 19.3 0.5 1 23 372 394 372 394 0.97 8 11 3e-06 0.00025 21.7 0.2 1 23 400 422 400 422 0.98 9 11 0.0011 0.091 13.6 0.7 1 21 427 447 427 447 0.96 10 11 0.0022 0.18 12.7 0.3 6 23 448 466 448 466 0.98 11 11 0.63 52 5.0 0.2 3 19 551 567 549 567 0.94
Sequence Information
- Coding Sequence
- ATGGTGGTGGCCACCAATCCCAGCATTATAGCCCAAAATCAAATGCCAGTTCAAATCATATCATCGACCGGTCAGGTTATGTCGCAAACAACTTTAGTGCAGGCCGCCGCCACAACAAATCCCCATTCAGTGGTTGCTGCTGTGCCCGCTGGCGTCACCGTACAGCCCACACATCAACAGCATCAGCATGCCGCTCAACAGTTGGCAAATGGTACGGCGGCTCAGAATAAACCGAAGTCACATTTTTGTGCCAGTTGTGGTAAAGGATTTGCCGCCAAACATGGCCTCATGCAGCATAATCGCCGTCATCCGAACGGTGGCTGCACCGTACACACTCACGTGTGCGAGTGTGGCAAGGCGTTCtttcaaaagaatcatttaatGTTGCATCAGCGCCAACATTTGGATACAATATCAAATATACAACAGCAaacgcaacagcaacaacaacagcagcagaagcagcaacaacagATGCCTTATCTGTTATCAACGGATGGCTCATTAACGGTACAGAAAGATGTAAAAGGTGCTGTGGCGGCCAATAAAGGTGTGGTTCGTCGCATGGTATTAGTAAATGATCCATTTACTACCGGAGCCCAAAGTTCGAAAATGGCTTCATGCGATATATTACCTGGTATCTCAGTGCAAGTGCAAAAAGTCATACAGGGCTTGGAGGATAATGACGAATCACAGGCGGCTGCTCCCAATTTGAAACTAGAACCGGGTACTTTGGAAATATCACCGAAAAATGAACTTCAagataatattaatttcaatgaGGGTGTTGCTACGATTAAGAAAGAACGTCCCTACAGCTGTGAGGAGTGCGGTAAATCGTTTCTGTTAAAACATCATTTGACCACGCATGCCCGTGTTCATACCGGTGAATGTCCCCACATATGCACCCACTGTGGCAAAAGCTTCGCTCACAAGCATTGCCTCAACACACATTTGCTGTTGCACTCCACCGATCGTCGGTATCAGTGTGTTGAGTGCAAGAAAAGTTTCACCTTGAAACATCATTTGTTGACACATTCACGTGTCCATTCACGCGATCGTCCCTTTGTATGTCAAGAATGCGGACGGACATTTCATGCTGGCGAACGACCCTACGTGTGCGAAGAGTGCGGTGAAAGTTTCGCCCAAGAGAATCATCTTATTATGCATTCACGATTCCATGGCTCAATTAATCCGTTTGTATGCCAAGACTGTGGTGTGACATTTCCCCGCAAGTTTCAACTGGTCAATCATGCACGCATTCATGGCAAAATACCTCATTCATGCACTGTTTGCGGCAAAGAGTTCTTACAGAAACGCACTTTAGTATCGCACATGCgTTGCGGTGAAGGCTTTATGACCAAGGCCGATTTGAATCATCACATACGCAGCACACATGGTGGAATTAATCCAAATTCTTCGACTACGGCCATAGTATCAAGCAATCCCATGATTAGTGCTCAGCAAAATACCCAAACTATACAGCAAGTACATCAGACTCAGgcacagcaacagcagcaacaacaacatcaacaacagcagcaacaacaacaccagaaTCATCCACAAACCATAACCGTGGTCAGTAATCCGAATAGTTCGACACTATTAACAGTAACCGCAAACGATCCGAACAGACCTCAGTATGGTTGTCGTGAATGTGGAAGTGCCTTCAATAGTCGCGAAACATTCGCTTTACATTAA
- Protein Sequence
- MVVATNPSIIAQNQMPVQIISSTGQVMSQTTLVQAAATTNPHSVVAAVPAGVTVQPTHQQHQHAAQQLANGTAAQNKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVHTHVCECGKAFFQKNHLMLHQRQHLDTISNIQQQTQQQQQQQQKQQQQMPYLLSTDGSLTVQKDVKGAVAANKGVVRRMVLVNDPFTTGAQSSKMASCDILPGISVQVQKVIQGLEDNDESQAAAPNLKLEPGTLEISPKNELQDNINFNEGVATIKKERPYSCEECGKSFLLKHHLTTHARVHTGECPHICTHCGKSFAHKHCLNTHLLLHSTDRRYQCVECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRTFHAGERPYVCEECGESFAQENHLIMHSRFHGSINPFVCQDCGVTFPRKFQLVNHARIHGKIPHSCTVCGKEFLQKRTLVSHMRCGEGFMTKADLNHHIRSTHGGINPNSSTTAIVSSNPMISAQQNTQTIQQVHQTQAQQQQQQQHQQQQQQQHQNHPQTITVVSNPNSSTLLTVTANDPNRPQYGCRECGSAFNSRETFALH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114467;
- 90% Identity
- iTF_01114464;
- 80% Identity
- -