Ochl013272.1
Basic Information
- Insect
- Ornithomya chloropus
- Gene Symbol
- -
- Assembly
- GCA_963971445.1
- Location
- OZ020531.1:17802674-17804784[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00012 0.0098 16.7 3.4 1 23 114 136 114 136 0.98 2 9 0.0012 0.1 13.5 2.4 1 17 142 158 142 159 0.91 3 9 0.00016 0.013 16.3 2.7 1 21 170 190 170 191 0.94 4 9 0.095 7.9 7.5 0.4 1 10 198 207 198 210 0.93 5 9 1.3e-05 0.0011 19.7 0.5 1 23 214 236 214 236 0.97 6 9 2.2e-06 0.00018 22.1 0.2 1 23 242 264 242 264 0.98 7 9 0.00081 0.067 14.1 0.7 1 21 269 289 269 289 0.96 8 9 0.0016 0.13 13.1 0.3 6 23 290 308 290 308 0.98 9 9 0.0019 0.16 12.9 0.3 3 23 385 405 383 405 0.97
Sequence Information
- Coding Sequence
- ATGCCTTATCTGTTATCAACGGATGGCTCATTAACGGTACAGAAAGATGTAAAAGGTGCTGTGGCGGCCAATAAAGGTGTGGTTCGTCGCATGGTATTAGTAAATGATCCATTTACCACCGGAGCCCAAAGTTCGAAAATGGCTTCATGCGATATATTACCTGGTATCTCAGTGCAAGTGCAAAAAGTCATACAGGGCTTGGAGGATAATGACGAATCACAGGCGGCTGCTCCCAATTTGAAACTAGAACCGGGTACTTTGGAAATATCACCGAAAAATGAACTTCAagataatattaatttcaatgaGGGTGTTGCTACGATTAAGAAAGAACGTCCCTACAGCTGTGAGGAGTGCGGTAAATCGTTTCTGTTAAAACATCATTTAACCACGCATGCCCGTGTTCATACCGGTGAACGTCCCCACATATGCACCCACTGTGGCAAAAGCTTCGCTCACAAGCATTGCCTCAACACATATTTGCTGTTGCACTCCACCGATCGTCGGTATCAGTGTGTTGAGTGCAAGAAAAGTTTCACCTTGAAACATCATTTGTTGACACATTCACGTGTCTATTCACGCGATCGTTCCTTTGTATGTCAAGAATGCGGACGGACATTTCATGCTGGCGAACGACCCTACGTGTGCGAAGAGTGCGGTGAAAGTTTCGCCCAAGAGAATCATCTTATTATGCATTCACGATTCCATGGCTCAATTAATCCGTTTGTATGCCAAGACTGTGGTGTGACATTTCCCCGCAAGTTTCAACTGGTCAATCATGCACGCATTCATGGCAAAATACCTCATTCATGCACTGTTTGCGGCAAAGAGTTCTTACAGAAACGCACTTTAGTATCGCACATGCgTTGCGGTGAAGGCTTTATGACCAAGGCCGATTTGAATCATCACATACGCAGCACACATGGTGGAATTAATCCAAATTCTTCGACTACGGCCATAGTATCAAGCAATCCCATGATTAGTGCTCAGCAAAATACCCAAACTATACAGCAAGTACATCAGACTCAggcacaacaacagcagcaacaacaacaccagaaTCATCCACAAACCATAACCGTGGTCAGTAATCCGAATAGTTCGACACTATTAACAGTAACCGCAAACGATCCGAACAGACCTCAGTATGGTTGTCGTGAATGTGGAAGTGCCTTCAATAGTCGCGAAACATTCGCTTTACATCAACGTTTGCATACAGGCGATAAAAATCTTATGACCGATTTGTGTGCATTGCGGCCAGCTTGCAGCCGGGCGGTACAATGGTGGTGGCCACCAATCCCAGCATTATAG
- Protein Sequence
- MPYLLSTDGSLTVQKDVKGAVAANKGVVRRMVLVNDPFTTGAQSSKMASCDILPGISVQVQKVIQGLEDNDESQAAAPNLKLEPGTLEISPKNELQDNINFNEGVATIKKERPYSCEECGKSFLLKHHLTTHARVHTGERPHICTHCGKSFAHKHCLNTYLLLHSTDRRYQCVECKKSFTLKHHLLTHSRVYSRDRSFVCQECGRTFHAGERPYVCEECGESFAQENHLIMHSRFHGSINPFVCQDCGVTFPRKFQLVNHARIHGKIPHSCTVCGKEFLQKRTLVSHMRCGEGFMTKADLNHHIRSTHGGINPNSSTTAIVSSNPMISAQQNTQTIQQVHQTQAQQQQQQQHQNHPQTITVVSNPNSSTLLTVTANDPNRPQYGCRECGSAFNSRETFALHQRLHTGDKNLMTDLCALRPACSRAVQWWWPPIPAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114440;
- 90% Identity
- iTF_01114463;
- 80% Identity
- -