Ochl013270.1
Basic Information
- Insect
- Ornithomya chloropus
- Gene Symbol
- -
- Assembly
- GCA_963971445.1
- Location
- OZ020531.1:17790361-17796196[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.016 1.3 10.0 2.7 1 23 45 67 45 67 0.95 2 12 0.015 1.3 10.0 6.5 5 23 80 98 72 98 0.92 3 12 0.00021 0.017 15.9 3.4 1 23 236 258 236 258 0.98 4 12 0.0011 0.088 13.7 10.5 1 23 264 286 264 286 0.96 5 12 0.00018 0.015 16.1 5.6 1 23 292 314 292 314 0.98 6 12 0.16 13 6.8 0.4 1 10 320 329 320 332 0.93 7 12 1.1e-05 0.00093 19.9 1.0 1 23 336 358 336 358 0.97 8 12 3.8e-06 0.00032 21.4 0.2 1 23 364 386 364 386 0.98 9 12 0.0014 0.12 13.3 0.7 1 21 391 411 391 411 0.96 10 12 0.0028 0.23 12.4 0.3 6 23 412 430 412 430 0.98 11 12 0.0036 0.3 12.0 0.2 3 23 507 527 505 527 0.97 12 12 0.015 1.3 10.0 6.5 5 23 657 675 649 675 0.92
Sequence Information
- Coding Sequence
- ATGTCGCAAACAACTTTAGTGCAGGCCGCCGCCACAACAAATCCCCATTCAGTGGTTGCTGCTGTGCCCGCTGGCGTCACCcaggcGGCTGCACCGCAACATCAACAGCAGGCCCAGAATAAACCGAAGTCACATTTTTGTGCCAGTTGTGGTAAAGGATTTGCCGCCAAACATGGCCTCATGCAGCATAATCGCCGTCATCCCAACGGTGGCTGCACCGTACACACTCACGTGTGCGAGTGTGGCAAAGCGTTCtttcaaaagaatcatttaatGTTGCATCAGCGCCAACATTTGGatacaaaatcaaatatacaacagcaaacgcaacagcaacaacaacagcagcagcagcagcaacaacagATGCCTTATCTGTTATCAACGGATGGCTCATTAACGGTACAGAAAGATGTAAAAGGTGCTGTGGCGGCCAATAAAGGTGTGGTTCGTCGCATGGTATTAGTAAATGATCCATTTACCACCGGAGCCCAAAGTTCGAAAATGGCTTCATGCGATATATTACCTGGTATCTCAGTGCAAGTGCAAAAAGTCATACAGGGCTTGGAGGATAATGACGAATCACAGGCGGCTGCTCCCAATTTGAAACTAGAACCGGGTACTTTGGAAATATCACCGAAAAATGAACTTCAagataatattaatttcaatgaGGGTGATGCTACGATTAAGAAAGAACGTCCCTACAGCTGTGAGGAGTGCGGTAAATCGTTTCTGTTAAAACATCATTTGACCACGCATGCCCGTGTTCATACCGGTGAACGTCCCCACATATGCACCCACTGTGGCAAAAGCTTCGCTCACAAGCATTGCCTCAACACACATTTGCTGTTGCACTCCACCGATCGTCGGTATCAGTGTGTTGAGTGCAAGAAAAGTTTCACCTTGAAACATCATTTGTTGACACATTCACGTGTCCATTCACGCGATCGTCCCTTTGTATGTCAAGAATGCGGACGGACATTTCATGCTGGCGAACGACCCTACGTTTGCGAAGAATGCGGTGAAAGTTTCACCCAAGAGAATCATCTTATTATGCATTCACGATTCCATGGCTCGATTAATCTGTTTGTATGCCAAGACTGTGGTGTGACATTTCCCCGCAAGTTTCAACTGGTCAATCATGCACGCATTCATGGCAAAATACCTCATTCATGCACTGTTTGCGGCAAAGAGTTCTTACAGAAACGCACTTTAGTATCGCACATGcgTTGCGGTGAAGGCTTTATGACCAAGGCCGATTTGAATCATCACATACGCAGCACACATGGTGGAATTAATCCAAATTCTTCGACTACGGCCATAGTATCAAGCAATCCCATGATTAGTGCTCAGCAAAATACCCAAACTATACAGCAAGTACATCAGACTCAggcacaacaacagcagcaacaacaacaccagaaTCATCCACAAACCATAACCGTGGTCAGTAATCCGAATAGTTCGACACTATTAACAGTAACCGCAAACGATCCGAACAGACCTCAGTATGGTTGTCGTGAATGTGGAAGTGCCTTCAATAGTCGCGAAGCATTCGCTTTACATCAACGTTTGCATACAGGCGATAAAAATCTTATGACCGATTTGTGTGCTTTGACGGCCGCTTTGCCGCCGCACTTCTTAAGCACGGCCAGCTTGCAGCCGGGCGGTACAACGGTGGTGGCCGCCAATCCCAGCATTATAGCCCAAAATCAAATGCCAGTTCAAATCATATCATCGACCGGTCAGGTTATGTCGCAAACAACTTTAGTGCAGGCCGCCGCCACAACAAATCCCCATTCAGTGGTTGCTGCTGTGCCCGCTGGCGTCACCGTACAGCCCACACATCAACAGCATCAGCATGCCGCTCAACAGTTGGCAAATGGATTTGCCGCCAAACATGGCCTCATGCAGCATAATCGCCGTCAACCGAACGGTGGCTGCACCGTACACACTCACGTGTGCGAGTGTGGCAAAGCGTTCtttcaaaagaatcatttaatGTTGCATCAGCGCCAACATTTGGatacaaaatcaaatatacaacagcaaacgcaacagcaacaacaacagcagcagcagcagcaacaacaggtGTGTTGA
- Protein Sequence
- MSQTTLVQAAATTNPHSVVAAVPAGVTQAAAPQHQQQAQNKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVHTHVCECGKAFFQKNHLMLHQRQHLDTKSNIQQQTQQQQQQQQQQQQQMPYLLSTDGSLTVQKDVKGAVAANKGVVRRMVLVNDPFTTGAQSSKMASCDILPGISVQVQKVIQGLEDNDESQAAAPNLKLEPGTLEISPKNELQDNINFNEGDATIKKERPYSCEECGKSFLLKHHLTTHARVHTGERPHICTHCGKSFAHKHCLNTHLLLHSTDRRYQCVECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRTFHAGERPYVCEECGESFTQENHLIMHSRFHGSINLFVCQDCGVTFPRKFQLVNHARIHGKIPHSCTVCGKEFLQKRTLVSHMRCGEGFMTKADLNHHIRSTHGGINPNSSTTAIVSSNPMISAQQNTQTIQQVHQTQAQQQQQQQHQNHPQTITVVSNPNSSTLLTVTANDPNRPQYGCRECGSAFNSREAFALHQRLHTGDKNLMTDLCALTAALPPHFLSTASLQPGGTTVVAANPSIIAQNQMPVQIISSTGQVMSQTTLVQAAATTNPHSVVAAVPAGVTVQPTHQQHQHAAQQLANGFAAKHGLMQHNRRQPNGGCTVHTHVCECGKAFFQKNHLMLHQRQHLDTKSNIQQQTQQQQQQQQQQQQQVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114453;
- 90% Identity
- iTF_01114450; iTF_01114453;
- 80% Identity
- -