Basic Information

Insect: Ornithomya chloropus
Gene Symbol: -
Assembly: GCA_963971445.1
Location: OZ020531.1:17811198-17816611[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.049 4 8.5 0.8 1 21 57 77 57 78 0.91

2 11 0.012 1 10.4 6.5 5 23 92 110 84 110 0.92

3 11 0.00016 0.014 16.2 3.4 1 23 248 270 248 270 0.98

4 11 0.00084 0.069 14.0 10.5 1 23 276 298 276 298 0.96

5 11 0.00014 0.012 16.4 5.6 1 23 304 326 304 326 0.98

6 11 0.13 11 7.1 0.4 1 10 332 341 332 344 0.93

7 11 1.8e-05 0.0015 19.2 0.5 1 23 348 370 348 370 0.97

8 11 3e-06 0.00025 21.7 0.2 1 23 376 398 376 398 0.98

9 11 0.0001 0.0085 16.9 2.0 1 23 403 426 403 426 0.97

10 11 0.0006 0.05 14.5 0.4 1 23 432 455 432 455 0.91

11 11 0.0026 0.22 12.4 0.3 3 23 532 552 530 552 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.049	4	8.5	0.8	1	21	57	77	57	78	0.91
2	11	0.012	1	10.4	6.5	5	23	92	110	84	110	0.92
3	11	0.00016	0.014	16.2	3.4	1	23	248	270	248	270	0.98
4	11	0.00084	0.069	14.0	10.5	1	23	276	298	276	298	0.96
5	11	0.00014	0.012	16.4	5.6	1	23	304	326	304	326	0.98
6	11	0.13	11	7.1	0.4	1	10	332	341	332	344	0.93
7	11	1.8e-05	0.0015	19.2	0.5	1	23	348	370	348	370	0.97
8	11	3e-06	0.00025	21.7	0.2	1	23	376	398	376	398	0.98
9	11	0.0001	0.0085	16.9	2.0	1	23	403	426	403	426	0.97
10	11	0.0006	0.05	14.5	0.4	1	23	432	455	432	455	0.91
11	11	0.0026	0.22	12.4	0.3	3	23	532	552	530	552	0.97

Sequence Information

Coding Sequence: ATGCCAGTTCAAATCATATCATCGACCGGTCAGGTTATGTCGCAAACAACTTTAGTGCAGGCCGCCGCCACAACAAATCCCCATTCAGTGGTTGCTGCTGTGCCCGCTGGCGTCACCcaggcGGCTGCACCGCAACATCAACAGCAGGCTCAGAATAAACCGAAGTCACATTTTTGTGCCAGTTGTGGTAAAGGATTTGCCGCCAAACATGGCCTCATGCAGCATAATCGCCGTCAACCGAACGGTGGCTGCACCGTACACACTCACGTGTGCGAGTGTGGCAAAGCGTTCtttcaaaagaatcatttaatGTTGCATCAGCGCCAACATTTGGatacaaaatcaaatatacaacagcaaacgcaacagcaacaacaacagcagcagcagcagcaacaacagATGCCTTATCTGTTATCAACGGATGGCTCATTAACGGTACAGAAAGATGTAAAAGGTGCTGTGGCGGCCAATAAAGGTGTGGTTCGTCGCATGGTATTAGTAAATGATCCATTTACCACCGGAGCCCAAAGTTCGAAAATGGCTTCATGCGATATATTAGCTGGTATCTCAGTGCAAGTGCAAAAAGTCATACAGGGCTTGGAGGATAATGACGAATCACAGGCGGCTGCTCCCAATTTGAAACTAGAACCGGGTACTTTGGAAATATCACCGAAAAATGAACTTCAagataatattaatttcaatgaGGGTGTTGCTACGATTAAGAAAGAACGTCCCTACAGCTGTGAGGAGTGCGGTAAATCGTTTCTGTTAAAACATCATTTGACCACGCATGCCCGTGTTCATATCGGTGAACGTCCCCACATATGCACCCACTGTGGCAAAAGCTTCGCTCACAAGCATTGCCTCAACACACATTTGCTGTTGCACTCCACCGATCGTCGGTATCAGTGTGTTGAGTGCAAGAAAAGTTTCACCTTGAAACATCATTTGTTGACACATTCACGTGTCCATTCACGCGATCGTCCCTTTGTATGTCAAGAATGCGGACGGACATTTCATGCTGGCGAACGACCCTACGTGTGCGAAGAGTGCGGTGAAAGTTTCGCCCAAGAGAATCATCTTATTATGCATTCACGATTCCATGGCTCGATTAATCTGTTTGTATGCCAAGACTGTGGTGTGACATTTCCCCGCAAGTTTCAACTGGTCAATCATGCACGCATTCATGGCAAAATACCTCATTCATGCACTGTTTGCGGCAAAGAGTTCTTACAGAAACGCACTTTAGTATCGCACATGcgTAGAGTACATACTGGGGATCAACCCTACCCTTGTATTAGTTGCGGTGAAGGCTTTATGACCAAGGCCGATTTGAATCATCACATACGCAGCACACATGGTGGAATTAATCCAAATTCTTCGACTACGGCCATAGTATCAAGCAATCCCATGATTAGTGCTCATCAAAATACCCAAACTATACAGcaAGTACATCAGACTCAggcacaacaacagcagcaacaacaacaccagaaTCATCCACAAACCATAACCGTGGTCAGTAATCCGAATAGTTCGACACTATTAACAGTAACCGCAAACGATCCGAACAGACCTCAGTATGGTTGTCGTGAATGTGGAAGTGCCTTCAATAGTCGCGAAACATTCGCTTTACATCAACGTTTGCATACAGGCGATAAAAATCTTATGACCGATTTGTGTGCATTGCGGCCAGCTTGCAGCCGGGCGGTACAATGA
Protein Sequence: MPVQIISSTGQVMSQTTLVQAAATTNPHSVVAAVPAGVTQAAAPQHQQQAQNKPKSHFCASCGKGFAAKHGLMQHNRRQPNGGCTVHTHVCECGKAFFQKNHLMLHQRQHLDTKSNIQQQTQQQQQQQQQQQQQMPYLLSTDGSLTVQKDVKGAVAANKGVVRRMVLVNDPFTTGAQSSKMASCDILAGISVQVQKVIQGLEDNDESQAAAPNLKLEPGTLEISPKNELQDNINFNEGVATIKKERPYSCEECGKSFLLKHHLTTHARVHIGERPHICTHCGKSFAHKHCLNTHLLLHSTDRRYQCVECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRTFHAGERPYVCEECGESFAQENHLIMHSRFHGSINLFVCQDCGVTFPRKFQLVNHARIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGDQPYPCISCGEGFMTKADLNHHIRSTHGGINPNSSTTAIVSSNPMISAHQNTQTIQQVHQTQAQQQQQQQHQNHPQTITVVSNPNSSTLLTVTANDPNRPQYGCRECGSAFNSRETFALHQRLHTGDKNLMTDLCALRPACSRAVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01114467;
90% Identity: iTF_01114464;
80% Identity: -