Basic Information

Insect: Ornithomya chloropus
Gene Symbol: ham
Assembly: GCA_963971445.1
Location: OZ020530.1:41520346-41555637[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.032 2.6 9.0 0.0 2 21 322 341 321 344 0.87

2 9 0.2 17 6.5 5.0 1 23 351 374 351 374 0.95

3 9 3.4e-07 2.8e-05 24.7 2.7 1 23 380 403 380 403 0.97

4 9 1.7e-06 0.00014 22.5 1.7 1 23 409 431 409 431 0.95

5 9 3.3e-05 0.0027 18.4 4.4 1 23 437 459 437 459 0.98

6 9 0.04 3.3 8.7 2.1 2 22 467 487 466 487 0.95

7 9 9.4e-09 7.8e-07 29.6 1.4 1 23 951 973 951 973 0.99

8 9 3.6e-07 3e-05 24.6 0.9 1 23 979 1002 979 1002 0.97

9 9 6.2e-05 0.0051 17.6 6.6 1 23 1008 1030 1008 1030 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.032	2.6	9.0	0.0	2	21	322	341	321	344	0.87
2	9	0.2	17	6.5	5.0	1	23	351	374	351	374	0.95
3	9	3.4e-07	2.8e-05	24.7	2.7	1	23	380	403	380	403	0.97
4	9	1.7e-06	0.00014	22.5	1.7	1	23	409	431	409	431	0.95
5	9	3.3e-05	0.0027	18.4	4.4	1	23	437	459	437	459	0.98
6	9	0.04	3.3	8.7	2.1	2	22	467	487	466	487	0.95
7	9	9.4e-09	7.8e-07	29.6	1.4	1	23	951	973	951	973	0.99
8	9	3.6e-07	3e-05	24.6	0.9	1	23	979	1002	979	1002	0.97
9	9	6.2e-05	0.0051	17.6	6.6	1	23	1008	1030	1008	1030	0.98

Sequence Information

Coding Sequence: ATGTTATTCGATCGTTATGCTGTCTCAGGCAGTAATAGTGACGAATACGAGCTGGGTGCCTTCAAACAATTCTCTCACAATTTGGCAGCGGCAAATCCTCTGCATCCGTTGGCTTTTCCTGGTAACACTACCACGCAATTACCCTTTCCCACAACATCACTTCAAAACGGTTACACGAGCGGTTCAGCGAAACGGCCACCCTTCGAGATGATGCCACCAGTGTCCTTAGCCAATCTTAATCCCTTAGCTCATACTTTAACACATGCTGCATCACCTGCTACTGCTACTGGAAGTACAGCCAATGCCAGCCATTTGGAGCAATTGTTGAATAGTAAAATGCAAGCGGAAAGATTACTGCTGGGTATGGCCCGCCTGCAAGAACCCATCTGTGATTTAGAGACAAGAGAAAACGGTGTCTACGCCAAGGTGCCACTTCGACAGGGCTGCCGTTTTGGTCCGTTTGCTGTGAATGAAACAAACAATGCTGACAAAGCGAATAATTGGGGTATACTAACCCTGCCCCACATACGAAGTTTGCTGCAACCTTCTCCAGATGTTTTGCACCTGCTAAAAAGTATCCGTTCTACCGCCAATGAGGATACGGAAAAGGAAGCTAATTTAAACAGCTATTACGTAGCGGGATGTCTGTGGTATGAAACCAATCGTAATATAATGGCCGATGAGGAAATTATTGTGGATGGACGGTCTAAGACACGCCTTGatccacaacaacaacaacaacaagagcatCATTGTGATAATCTAATAAGTGGAGGGGTCTACACAGCGTCGACAACACTGACAACAGTGTCAACAGCAACGCTGCCAATATCGACAGTCACAACAGGCAGTGGCAGTAACGGTGATAAACGTGATAAACACGAAAGTGATAATGGTATATTTTACAATCAATCGAAGTCATTGGAAAGTGAATTAAGTGATGATGAGCACGGCTTCGATATACGTTGCGAAGTGTGCGAGAAAACTTTTGTGGATTTAGAGCGATTGGACGATCATTTGGTGGGAGCTCATCATTTCCGCAAAGACGAATTCCACTGTGATTTGTGTGCCTTGCGATTTTGTCATCGTACATTGTTGTTGAAACATCGCGCCATAGTACACAACGAAGTACGTAAATTTCCATGCGAGAATTGTACCAAGGTATTTTGTGATTCGTCGAATTTGCAGCGTCACATACGTAATCGTCATATAGGGGCTAGAAGTCACGCGTGTCCAGAGTGCGGTAAAACGTTCGCTACCTCATCCGGTCTAAagcaacatacacacatacactcgTCGGTAAAACCGTTCCCGTGTACTGTCTGCTTTAAGGCCTATACACAGTTTTCGAATTTGTGTCGTCATAGACGTATGCACGCCGCTTGCCGCATGCAGATCAAGTGCAACAAATGCGGTCAAAATTGTCAATCGGACAGCGCTTTATCAAAACATAAACGCACTTGTGATTCCTTCAACATTTCGGCAGTTGGCAGTGTACCCCTGCCGCCGAATTTACCACATTCTTTACATCATCCAGCATCACATGCAATATCTCAATCTCGTTCGAAAATAAACGTAAACAATTTGACAACAAACTCAGGCGCGCCAACACCATCACAACCACCAACAGGAGTCAATATGGCCTCTCCACCCAATCCCTACTTTCTATTTCGTCCCCCATTCTTTACAGCATTCTCACCAGCAGCTGCCTATGGTTTACACAGTATGTTTCCACCACCCCCCGTCACTCAGAGTGCTAATTTCCCCTTAATGTTTACCAAAGCAAATATCGAGCATCATTTGACGAGCCCACGTTCAGAACTTGGCATTCGCAAAGACATAAACCATGCCAATCTAAATATGGGTCAATTGACAGATAATCTACATATTGGTGAGTCAGATGTATATGGTGTACCCTTATCCAAACGGTTAGCGGGTACAAAAGAAGAGAATGTGGATGATGTGATGGAGATTAAAGCTGAAAATAATACCGATGAGGAAGACACTAATGGTTCTGTCATGGAAATGCCGGAACATCTCAAAGAAGAAGATATTACGAAAATTAGCGACAATGATGGGACGGAAAGCTTGGGGAATAGAGATCAAGAAAAGGATAACGATGAAAAAGACGAAGAGACATCTTCAAAATATAACGAAGAAGACAAGAAATCAATTGACATTGTGTCATTATCACCACATGCCGATTCTGAACTGAAATCGAATGCTCACGAGCTACCATTAGATTTGAGTATAACACGAAAGCGTTTCAACACGGAATCATTAATAATCTCGGACAATGAGACCAGCACCTTTGAACAGGATAATAATTTAAGTAAACGTGAAGCACCGCAAACACCGAGTAGGCAAGAGTTGCAAGAATACTACGAAGCGGACATGAAACGTTTAAAGTATAATACTACTGAGCGGATTGCGGCTCCATCTCCATCTCCGGGACCCACACCGTCACCATCTCCCCCTAGCAATCGCGCAACTCCCACAAATACATTATTTGCTGACAATACTCACaaacatcagcagcagcaacaacaacaacaacaacaacaacaacatttatctCCCAACGCTGTACCTAATTGTCCTCGTCCCATACACCCCATGCTGCTAGATGAACTTTATCGTACACATGCCTTGGAGTCAGCCTTTCCACGTCCCTTTCCTTTTTTAGGCCTAATGGGCGAAAGGCGACCGGCTTTTGATAACAATGCGCTGCAGTGCCGAGGTGCTGCCGGTGATCGCTTTCCGCCCGAACCGATCTTCCGTGAGGCTCTACGCGGCTTAACTGGCGGTGTGTTGGCTGCCGCTCAGCATGTGGGCAAACTTAAAGATCGTTACTCGTGCAAGTTTTGCGGCAAAGTATTTCCACGTTCGGCTAATCTGAAACGTCATCTAAGAACGCACACCGGCGAACAGCCTTATACTTGCAAGTATTGTGATCGTGCCTTTAGCATATCCTCCAACTTGCAACGACACGTACGTAATATTCACAAGAAAGAACGACCATTCCGCTGTCATCTGTGCGATCGCTGTTTCGGTCAACAAACCAATCTGGACCGTCATCTGAAGAAACATGAAGCAGACACTACCGGTTTAGGACTTGCCATCAGTGATTCACCTTCTTCCAACGAAGCGGATCGCGAAGATTcttattttgatgaaatacGCAATTTCATGGACCGCGTCACCTACAATGAGCATCTGTATACACCAACCAGTATAACAGCCCCAGAAAACGATATCGACTATAATGGCAGCGATGTTGAAAATGATCTTTCTATATCGCGACCCTCCACCGCTGATAATGCCCTCAACTGCAGTTACGCGGAGGCAATAAActgccaaaatcaaattaaagcGGACGGAGAAAACAACGAATAA
Protein Sequence: MLFDRYAVSGSNSDEYELGAFKQFSHNLAAANPLHPLAFPGNTTTQLPFPTTSLQNGYTSGSAKRPPFEMMPPVSLANLNPLAHTLTHAASPATATGSTANASHLEQLLNSKMQAERLLLGMARLQEPICDLETRENGVYAKVPLRQGCRFGPFAVNETNNADKANNWGILTLPHIRSLLQPSPDVLHLLKSIRSTANEDTEKEANLNSYYVAGCLWYETNRNIMADEEIIVDGRSKTRLDPQQQQQQEHHCDNLISGGVYTASTTLTTVSTATLPISTVTTGSGSNGDKRDKHESDNGIFYNQSKSLESELSDDEHGFDIRCEVCEKTFVDLERLDDHLVGAHHFRKDEFHCDLCALRFCHRTLLLKHRAIVHNEVRKFPCENCTKVFCDSSNLQRHIRNRHIGARSHACPECGKTFATSSGLKQHTHIHSSVKPFPCTVCFKAYTQFSNLCRHRRMHAACRMQIKCNKCGQNCQSDSALSKHKRTCDSFNISAVGSVPLPPNLPHSLHHPASHAISQSRSKINVNNLTTNSGAPTPSQPPTGVNMASPPNPYFLFRPPFFTAFSPAAAYGLHSMFPPPPVTQSANFPLMFTKANIEHHLTSPRSELGIRKDINHANLNMGQLTDNLHIGESDVYGVPLSKRLAGTKEENVDDVMEIKAENNTDEEDTNGSVMEMPEHLKEEDITKISDNDGTESLGNRDQEKDNDEKDEETSSKYNEEDKKSIDIVSLSPHADSELKSNAHELPLDLSITRKRFNTESLIISDNETSTFEQDNNLSKREAPQTPSRQELQEYYEADMKRLKYNTTERIAAPSPSPGPTPSPSPPSNRATPTNTLFADNTHKHQQQQQQQQQQQQHLSPNAVPNCPRPIHPMLLDELYRTHALESAFPRPFPFLGLMGERRPAFDNNALQCRGAAGDRFPPEPIFREALRGLTGGVLAAAQHVGKLKDRYSCKFCGKVFPRSANLKRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHKKERPFRCHLCDRCFGQQTNLDRHLKKHEADTTGLGLAISDSPSSNEADREDSYFDEIRNFMDRVTYNEHLYTPTSITAPENDIDYNGSDVENDLSISRPSTADNALNCSYAEAINCQNQIKADGENNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -